View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12301_high_2 (Length: 325)
Name: NF12301_high_2
Description: NF12301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12301_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 13 - 293
Target Start/End: Original strand, 35862440 - 35862720
Alignment:
| Q |
13 |
acctgtgtgtatggccgaaatactatcaccggaggctaaccaaggttagcccatcaaagcgatactatcacttgtgtcaatcctccgccttgcgcctctt |
112 |
Q |
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| T |
35862440 |
acctatgtgtatggccgaaatactatcaccggaggctaaccaaggttagcccatcaaagcgatactatcacttgtgtcaatactccgccttgcgcctctt |
35862539 |
T |
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| Q |
113 |
ttcaccacatcctttacactaagccagacattgctcgtggtggtacctattttagcccctaaagaaattagaagtcggaaaataacgagtcttaaataga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35862540 |
ttcaccacatcctttacactaagccagacattgctcgtggtggtaccttttttagcccctaaagaaattagaagtcggaaaataacgagtcttaaataga |
35862639 |
T |
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| Q |
213 |
cgtgacacaaggctatgtgcatcaatctaaagtttccaggcttgtttaacgagcattgcatcactgaaagaggtgatgtcc |
293 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35862640 |
cgtgacacaaggctatgtgcatcaatctgaagtttccaggcttgtttaacgagcattgcatcactgaaagaggtgatgtcc |
35862720 |
T |
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Back To:
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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 14278737 - 14278618
Alignment:
| Q |
16 |
tgtgtgtatggccgaaatactatcaccggaggctaaccaaggttagcccatcaaagcgatactatcacttgtgtcaatcctccgccttgcgcctcttttc |
115 |
Q |
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||||||||||||| || ||||||||||||||||||||||||||| | ||||||||| |||| ||| || |||| |||| | | ||||||| |||||| | |
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| T |
14278737 |
tgtgtgtatggcctaattactatcaccggaggctaaccaaggttggtccatcaaagggatattattacatgtgccaatagtgcaccttgcgtctctttac |
14278638 |
T |
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| Q |
116 |
accacatcctttacactaag |
135 |
Q |
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| T |
14278637 |
accacatcttttacactaag |
14278618 |
T |
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