View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12301_low_3 (Length: 310)
Name: NF12301_low_3
Description: NF12301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12301_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 20 - 295
Target Start/End: Complemental strand, 9003008 - 9002733
Alignment:
| Q |
20 |
tcaagcttgttgagatcaacatcacgaataacatcaaggtcaatcttctcataagagacttttttcctcaagtagtattgaagaagctcttcttcagtag |
119 |
Q |
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| T |
9003008 |
tcaagcttgttgagatcaacatcacgaataacatcaaggtcaatcttctcataagagacttttttcctcaagtagtattgaagaagctcttcttcagtag |
9002909 |
T |
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| Q |
120 |
gatgaaaccggaatccaggaggaacttgagattgtccattaacagatatactcatgttatcaggcattaaggtaactaaagttgttaagagagagtggta |
219 |
Q |
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| T |
9002908 |
gatgaaaccggaatccaggaggaacttgagattgtccattaacagatatactcatgttatcaggcattaaggtaactaaagttgttaagagagagtggta |
9002809 |
T |
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| Q |
220 |
gcaaaagaagataagctaggtagctatgtagtggttctagattttcacaagggacccaaaaagttgagagaacaca |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9002808 |
gcaaaagaagataagctaggtagctatgtagtggttctagattttcacaagggacccaaaaagttgagagaacaca |
9002733 |
T |
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