View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12301_low_4 (Length: 236)
Name: NF12301_low_4
Description: NF12301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12301_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 1883604 - 1883402
Alignment:
| Q |
18 |
tcaaaaatactagattcttaaaatcattttcaaagaatactaaactattttaataaacataccaagagtgacctctttgaagaaatccttcagtcttgac |
117 |
Q |
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| T |
1883604 |
tcaaaaatactagattcttaaaatcattt-caaagaatactaaactattttaataaacataccaagagtgacctctttgaagaaatccttcagtcttgac |
1883506 |
T |
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| Q |
118 |
accatgtttgtttgaagtgagaattccatctccatatttgtgtcttgcagttgaatcactctcagattcccacatgttggatggataaaactagattcac |
217 |
Q |
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| T |
1883505 |
accatgtttgtttgaagtgagaattccatctccatatttgtgtcttgcagttgaatcactctcagattcccacatgttggatggataaaactagattcac |
1883406 |
T |
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| Q |
218 |
acag |
221 |
Q |
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|||| |
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| T |
1883405 |
acag |
1883402 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 37215786 - 37215868
Alignment:
| Q |
73 |
aacataccaagagtgacctctttgaagaaatccttcagtcttgacaccatgtttgtttgaagtgagaattccatctccatatt |
155 |
Q |
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| T |
37215786 |
aacataccatgagttgcctctttgatgaaaaccttcaatcttaacaccatgtttggttgaggtgagaactccacctccatatt |
37215868 |
T |
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