View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12301_low_5 (Length: 202)
Name: NF12301_low_5
Description: NF12301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12301_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 24693141 - 24692971
Alignment:
| Q |
18 |
ctttatgctcagaacttataggttctatgttggccattgagatagcttacaggatgaattggcggtatctttggttagaaactgattcaatgttagtttc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24693141 |
ctttatgctcagaacttataggttctatgttggccattgagatagctcacaggatgaattggcggtatctttggttagaaactgattcgatgttagtttc |
24693042 |
T |
|
| Q |
118 |
ctcggctttcaagtcttccaaagtggtcccttggcatttacataacagatggaacaattgtattcatctca |
188 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24693041 |
ctcggctttcaagtcttccaaagtgctccattggcatttacataacagatggaacaattgtattcatctca |
24692971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 20653133 - 20653303
Alignment:
| Q |
18 |
ctttatgctcagaacttataggttctatgttggccattgagatagcttacaggatgaattggcggtatctttggttagaaactgattcaatgttagtttc |
117 |
Q |
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||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
20653133 |
ctttatgctcagaacttataggtgctatgttggtcattgagatagctcacaggatgaattggtggtatctttggttagaaactgattcaatgttagtttc |
20653232 |
T |
|
| Q |
118 |
ctcggctttcaagtcttccaaagtggtcccttggcatttacataacagatggaacaattgtattcatctca |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
20653233 |
ctcggctttcaagtcttccaaagtggtcccttggcatttacataacagatggaccaattgtattcatctca |
20653303 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 23 - 188
Target Start/End: Complemental strand, 47506482 - 47506317
Alignment:
| Q |
23 |
tgctcagaacttataggttctatgttggccattgagatagcttacaggatgaattggcggtatctttggttagaaactgattcaatgttagtttcctcgg |
122 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47506482 |
tgctcagaacttataggtgctatgttggccattgagatagctcacaggatgaattggcggtatctttggttagaaactgattcaatgttagtttcctcgg |
47506383 |
T |
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| Q |
123 |
ctttcaagtcttccaaagtggtcccttggcatttacataacagatggaacaattgtattcatctca |
188 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
47506382 |
ctttcaagtcttctaaagtggtcccttggcatttacataatagatggaccaattgtattcatctca |
47506317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 25269968 - 25269798
Alignment:
| Q |
18 |
ctttatgctcagaacttataggttctatgttggccattgagatagcttacaggatgaattggcggtatctttggttagaaactgattcaatgttagtttc |
117 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25269968 |
ctttatgctcagaacttataggtgctatgttggccattgagatagctcacaggatgaattggcggtatctttggttagaaactgattcaatgttagtatc |
25269869 |
T |
|
| Q |
118 |
ctcggctttcaagtcttccaaagtggtcccttggcatttacataacagatggaacaattgtattcatctca |
188 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25269868 |
ctcagctttcaagtcttccaaagtggtcccttggcatttacataacagatggaacaattgtattcatctca |
25269798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 151; Significance: 4e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 15291056 - 15291226
Alignment:
| Q |
18 |
ctttatgctcagaacttataggttctatgttggccattgagatagcttacaggatgaattggcggtatctttggttagaaactgattcaatgttagtttc |
117 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15291056 |
ctttatgctcaaaacttatatgtgctatgttggccattgagatagctcacaggatgaattggcggtatctttggttagaaactgattcaatgttagtttc |
15291155 |
T |
|
| Q |
118 |
ctcggctttcaagtcttccaaagtggtcccttggcatttacataacagatggaacaattgtattcatctca |
188 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15291156 |
cttggctttcaagtcttccaaagtggtcccttggcatttacataacagatggaacaattgtattcatctca |
15291226 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 48 - 188
Target Start/End: Complemental strand, 1663002 - 1662862
Alignment:
| Q |
48 |
tggccattgagatagcttacaggatgaattggcggtatctttggttagaaactgattcaatgttagtttcctcggctttcaagtcttccaaagtggtccc |
147 |
Q |
| |
|
||||||||||||| || ||| || | ||||||| || ||||||||||||| |||||||| | ||||| | ||||||||||||||||||||| || || |
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| T |
1663002 |
tggccattgagattgcgcacaagaaggattggcgctacttttggttagaaacatattcaatgcttgtttctttggctttcaagtcttccaaagttgtgcc |
1662903 |
T |
|
| Q |
148 |
ttggcatttacataacagatggaacaattgtattcatctca |
188 |
Q |
| |
|
|||||| | || || ||||||| ||||||||||||||||| |
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| T |
1662902 |
atggcatcttcaaaatagatggagcaattgtattcatctca |
1662862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 23497482 - 23497654
Alignment:
| Q |
18 |
ctttatgctcagaacttataggttctatgttggccattgagatagcttacaggatgaattggcggtatctttggttagaaactgattcaatgttagtttc |
117 |
Q |
| |
|
||||||| || |||||||| || ||||| ||||||||||||| || |||| || ||||||||| || |||||||||||| ||||| ||| | ||||| |
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| T |
23497482 |
ctttatgttctgaacttattggggctatggtggccattgagattgcgtacaagaagaattggcgctacttttggttagaaatggattcgatgcttgtttc |
23497581 |
T |
|
| Q |
118 |
ctcggctttcaagtcttccaaagtggtcccttggcatttacataacagatggaacaattgtattcatctcact |
190 |
Q |
| |
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| ||||||||| ||| |||||| || || |||||| | || || ||||||||||| || |||||||||||| |
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| T |
23497582 |
tttggctttcaaatctcccaaagctgtgccatggcatcttcaaaatagatggaacaactgcattcatctcact |
23497654 |
T |
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