View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12302_high_2 (Length: 328)
Name: NF12302_high_2
Description: NF12302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12302_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 7 - 310
Target Start/End: Original strand, 48983158 - 48983452
Alignment:
| Q |
7 |
ggagcagagacatagttcacttaattaattaacacgcttttggtaaaggaaaagaaacaagtacatttttaccatgttggtgttatttgtagcaattgat |
106 |
Q |
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| T |
48983158 |
ggagctgagacatagttcacttaattaattaacacgcttttggtaaaggaaaagaaacaagtacatttttaccatgttggtgttatttgtagcaattgat |
48983257 |
T |
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| Q |
107 |
gttgtagagatgacttgtgagggtgaggcagtgtcactcactcagtcttatggtgatctgtacttatgattgatttaagaattcaagggaatcattttcg |
206 |
Q |
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| T |
48983258 |
gttgtagagatgacttgtgagggtgaggcattg----tcactcagtcttatggtgatctgtacttatgattgatttaagaattcaagggaatcattttcg |
48983353 |
T |
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| Q |
207 |
tgcacacgacttgtcttttcatcacctatgctatgttatgttgttcctctcctctcgttccttgattactatttttatggcattcattcatcttcaaacg |
306 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
48983354 |
cgcacacgacttgtcttttcatcacctatgc-----tatgttgttcctctcctctccttccttgattactatttttatggcattcattcatctgtaaacg |
48983448 |
T |
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