View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12302_low_2 (Length: 328)

Name: NF12302_low_2
Description: NF12302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12302_low_2
NF12302_low_2
[»] chr1 (1 HSPs)
chr1 (7-310)||(48983158-48983452)


Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 7 - 310
Target Start/End: Original strand, 48983158 - 48983452
Alignment:
Q  7 ggagcagagacatagttcacttaattaattaacacgcttttggtaaaggaaaagaaacaagtacatttttaccatgttggtgttatttgtagcaattgat 106  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48983158 ggagctgagacatagttcacttaattaattaacacgcttttggtaaaggaaaagaaacaagtacatttttaccatgttggtgttatttgtagcaattgat 48983257  T
Q  107 gttgtagagatgacttgtgagggtgaggcagtgtcactcactcagtcttatggtgatctgtacttatgattgatttaagaattcaagggaatcattttcg 206  Q
    |||||||||||||||||||||||||||||| ||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48983258 gttgtagagatgacttgtgagggtgaggcattg----tcactcagtcttatggtgatctgtacttatgattgatttaagaattcaagggaatcattttcg 48983353  T
Q  207 tgcacacgacttgtcttttcatcacctatgctatgttatgttgttcctctcctctcgttccttgattactatttttatggcattcattcatcttcaaacg 306  Q
     ||||||||||||||||||||||||||||||     |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||    
T  48983354 cgcacacgacttgtcttttcatcacctatgc-----tatgttgttcctctcctctccttccttgattactatttttatggcattcattcatctgtaaacg 48983448  T

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