View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12302_low_4 (Length: 247)
Name: NF12302_low_4
Description: NF12302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12302_low_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 45604708 - 45604474
Alignment:
| Q |
13 |
cacagatagcacaacatttgccaggaaggacagacaatgagataaaaaactattggcattcatatttgaaaaagagagtggccaaagctatggaaatgga |
112 |
Q |
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| T |
45604708 |
cacagatagcacaacatttgccaggaaggacagacaatgagataaaaaactattggcattcatatttgaaaaagagagtggccaaagctatggaaatgga |
45604609 |
T |
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| Q |
113 |
atcacacaaacaatttcaatatgctagctcaagctcagatacaatgaactcttcaccctctcttcaaaaacttgcaacacaagatccacacaattataag |
212 |
Q |
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| T |
45604608 |
atcacacaaacaatttcaatatgctagctcaagctcagatacaatgaactcttcaccctctcttcaaaaacttgcaacacaagatccacataattataag |
45604509 |
T |
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| Q |
213 |
agcatcaccaaagagactcatcaaagcaccttacc |
247 |
Q |
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| T |
45604508 |
agcatcaccaaagagactcatcaaagcaccttacc |
45604474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 15 - 163
Target Start/End: Original strand, 20069851 - 20069999
Alignment:
| Q |
15 |
cagatagcacaacatttgccaggaaggacagacaatgagataaaaaactattggcattcatatttgaaaaagagagtggccaaagctatggaaatggaat |
114 |
Q |
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| T |
20069851 |
cagattgcacaacaattgccgggaaggaccgacaacgagattaaaaattattggcattcatatctgaaaaagaaagaagtcaaaagtaaggatattgaat |
20069950 |
T |
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| Q |
115 |
cacacaaacaatttcaatatgctagctcaagctcagatacaatgaactc |
163 |
Q |
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| T |
20069951 |
ctcatactcaaattcaatatgctagttcaagctcagatacaatgaactc |
20069999 |
T |
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