View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12303_high_1_N (Length: 598)
Name: NF12303_high_1_N
Description: NF12303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12303_high_1_N |
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Alignment Details
Target: chr2 (Bit Score: 459; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 61 - 578
Target Start/End: Complemental strand, 37837644 - 37837127
Alignment:
| Q |
61 |
ttcaaacgcacgcatgccccgaaatatttgaaaccttatcttgctctatcagtcacacattgaatgatgaaatgacataatcgaaattgcaaattctatt |
160 |
Q |
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| T |
37837644 |
ttcaaacgcacgcatgccccgaaatatttgaaaccttatcttgctctatt-gtgacacattgaatgatgaaatgacataatcgaaattgcaaattctatt |
37837546 |
T |
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| Q |
161 |
atatgtacatgtacatattggttagtgcagtttggagaaggtggatatgaaatgctactgctaaattccgatttttgagcttgattattctgttgaaagt |
260 |
Q |
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| T |
37837545 |
atatgtacatgtacatattggttagtgcagtttggagaaggtggatatgaaatgctactgctaaattccgatttttgagcttgatttttctgttgaaagt |
37837446 |
T |
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| Q |
261 |
ttacatttcttctgttaagagcatctatcttcaatgaaggtgtcaaagaggatttatatgttgatcaacggcgctgctatacatagctagaaaaatcatc |
360 |
Q |
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| T |
37837445 |
ttacatttcttctgttaagagcatctatcttcaatgaaggtgtcaaagaggatttatatgttgatgaacggtgctgctatacatagcgagaaaaatcatc |
37837346 |
T |
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| Q |
361 |
ccgaaattcacgaaggctacgtgtcaatattcaaagttgtggggaaaatgcatgaggcagcttacaataggaaa-tgggcggaaaacattggtgcttgac |
459 |
Q |
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| T |
37837345 |
ccgaaattcacgaaggctacgtgtcaatattcaaagttgtggggaaaatgcatgaggcagcttacaataggaaattgggcggaaaacattggtgcttgac |
37837246 |
T |
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| Q |
460 |
caatagaaatgatttctggacaatttcggaattaactattcgcttgatgcaacattatccattgacgaatctatatctaaatttttctgtttattggtgg |
559 |
Q |
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| T |
37837245 |
caatagaaatgatttcgggacaatttcggaattaactattcgcttgatgcaacattatccgttgacgaatctatatctaaatttttcggtttattggtgg |
37837146 |
T |
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| Q |
560 |
aaccatgaattgatgatgt |
578 |
Q |
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| T |
37837145 |
aaccatgaatccatgatgt |
37837127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 37837576 - 37837618
Alignment:
| Q |
24 |
tcatcattcaatgtgtcacaatagagcaagataaggtttcaaa |
66 |
Q |
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| T |
37837576 |
tcatcattcaatgtgtcacaatagagcaagataaggtttcaaa |
37837618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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