View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12303_high_5 (Length: 351)
Name: NF12303_high_5
Description: NF12303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12303_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 48 - 323
Target Start/End: Original strand, 2044697 - 2044977
Alignment:
| Q |
48 |
gtactctattacaaaggacatggcatggcaataccatttccaatatacttgtgattttgtaccgaattgagtatgttttctttcaatttgtaggagtggc |
147 |
Q |
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| T |
2044697 |
gtactctattacaaaggacatggcatgacaataccatttccaatatacttgtgattttgtaccgaattgagtatgttttctttcaatttgtaggagtggc |
2044796 |
T |
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| Q |
148 |
ttttggggctggagcttctatggtagacggggctgtggatgctgtgtttggtcctcgaactattcgaaatgaaaaagttgttactggatct------cct |
241 |
Q |
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| T |
2044797 |
ttttggggctgga-cttctatggtagacagggctgtggatgctgtgttttgtcctcgaactattcgaaatgaaaaagttgttactggatctcctgcacct |
2044895 |
T |
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| Q |
242 |
gcacccgcacccgcacccaatgctaaaagtcttagtagcgatgcatgcgatattcactcaaaggctttcctagatgtatgtt |
323 |
Q |
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| T |
2044896 |
gcacccgcacccgcacccaatgctaaaagtcttagtagcgatgcatgcgatattcactcaaaggctttcctagatgtatgtt |
2044977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 94 - 221
Target Start/End: Original strand, 2041473 - 2041600
Alignment:
| Q |
94 |
acttgtgattttgtaccgaattgagtatgttttctttcaatttgtaggagtggcttttggggctggagcttctatggtagacggggctgtggatgctgtg |
193 |
Q |
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| T |
2041473 |
acttatgattttgtaatgaattgagtttgtttactttcaatttgtaggagtggctttttggactgaagtttctgttgcacgcagggctgtggatgctgta |
2041572 |
T |
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| Q |
194 |
tttggtcctcgaactattcgaaatgaaa |
221 |
Q |
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| T |
2041573 |
tttggccctccaactattcgaagtgaaa |
2041600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 248 - 327
Target Start/End: Original strand, 2041651 - 2041730
Alignment:
| Q |
248 |
gcacccgcacccaatgctaaaagtcttagtagcgatgcatgcgatattcactcaaaggctttcctagatgtatgttgttt |
327 |
Q |
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| T |
2041651 |
gcacctgcacccaatactcaaagtcttggtagcgatgcatgcaatattcactcaaaggctttccttgatgtaagttgttt |
2041730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 2044665 - 2044697
Alignment:
| Q |
1 |
aaagttagggaaagtaatattctttcaattagg |
33 |
Q |
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| T |
2044665 |
aaagttagggaaagtaatattctttcaattagg |
2044697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 327
Target Start/End: Complemental strand, 37032748 - 37032702
Alignment:
| Q |
281 |
gatgcatgcgatattcactcaaaggctttcctagatgtatgttgttt |
327 |
Q |
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| T |
37032748 |
gatgcatgcaatattcattcaaaggcattccaagatgtatgttgttt |
37032702 |
T |
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