View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12303_high_8 (Length: 323)
Name: NF12303_high_8
Description: NF12303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12303_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 2045325 - 2045007
Alignment:
| Q |
1 |
agcataggatggcaaaggaaatgaaacacgtgtcatgcactcaatttccttctgcactctacgagcatgtccttgtaaaactggtacttgctaatctcat |
100 |
Q |
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||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2045325 |
agcattggatggcaaaggaaatgaaacacgtttcatgcactcaatttccttctgcactctacgagcatgtccttgtaaaactggcacttgctaatctcat |
2045226 |
T |
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| Q |
101 |
tttcattgctattaatgcactgcaatcaaaggaacaggttcactataagaaatatttcttaaatagaatgcaagtacaaaagcaattttgtagaatttga |
200 |
Q |
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||||||||||||||||||||||||| |||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2045225 |
tttcattgctattaatgcactgcaaccaaaagaacagattcactataagaaatatt-cttaaatagaatgcaagtacaaaagcaattttgtagaatttga |
2045127 |
T |
|
| Q |
201 |
acacatcgttattgttttgttatacactatttagtaaaatattgtcaaatagcagctatagtggctctaaaatactattgcgtagtcaaatttgaacaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2045126 |
acacatcgttattgttttgttatacactatttagtaaaatattatcaaatagcagctatagtggctctaaaatactattgcgtagtcaaatttgaacaaa |
2045027 |
T |
|
| Q |
301 |
ctatattattttcaacaacata |
322 |
Q |
| |
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| ||||||||||||||||||| |
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| T |
2045026 |
c--tattattttcaacaacata |
2045007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 2042136 - 2042059
Alignment:
| Q |
86 |
acttgctaatctcattttcattgctattaatgcactgcaatcaaaggaacaggttcactataagaaatatttcttaaa |
163 |
Q |
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||||||| ||||||||||||||||| ||||||||||| || |||| ||||||| |||| | |||||||||||||||| |
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| T |
2042136 |
acttgctgatctcattttcattgctgttaatgcactgaaaccaaatgaacaggatcaccttgagaaatatttcttaaa |
2042059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 301
Target Start/End: Original strand, 7347691 - 7347802
Alignment:
| Q |
192 |
agaatttgaacacatcgttattgttttgttatacactatttagta--aaatattgtcaaatagcagctatagtggctctaaaatactattgcgtagtcaa |
289 |
Q |
| |
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|||||||||||| || | |||||||||| ||||||||||||||| ||||||||| ||||||| ||||||| ||| ||| | |||| ||||||| | | |
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| T |
7347691 |
agaatttgaacaaattgctattgttttgcaatacactatttagtacaaaatattgtgaaatagcggctatagaggcgctatagtactgttgcgtaatgta |
7347790 |
T |
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| Q |
290 |
atttgaacaaac |
301 |
Q |
| |
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|||||||||||| |
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| T |
7347791 |
atttgaacaaac |
7347802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 15955889 - 15955961
Alignment:
| Q |
190 |
gtagaatttgaacacatcgttattgttttgttatacactatttag--taaaatattgtcaaatagcagctata |
260 |
Q |
| |
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|||||||||||||| |||||| ||||| ||| ||||||||||||| ||||| ||||||||||||| ||||| |
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| T |
15955889 |
gtagaatttgaacaaatcgttcttgttatgtgatacactatttaggacaaaatgttgtcaaatagcatctata |
15955961 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 280
Target Start/End: Original strand, 2732936 - 2733024
Alignment:
| Q |
194 |
aatttgaacacatcgttattgttttgttatacactatttagta--aaatattgtcaaatagcagctatagtggctctaaaatactattg |
280 |
Q |
| |
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|||||||||| |||| |||||||||| ||| |||||||||| |||| |||||||||||||||||||| ||| ||| |||||||||| |
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| T |
2732936 |
aatttgaacaaatcgctattgttttgcgatatgctatttagtacaaaatgttgtcaaatagcagctatagaggcgctataatactattg |
2733024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 265
Target Start/End: Original strand, 739716 - 739745
Alignment:
| Q |
236 |
aaaatattgtcaaatagcagctatagtggc |
265 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
739716 |
aaaatattgtcaaatagcagctatagtggc |
739745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 25268816 - 25268875
Alignment:
| Q |
192 |
agaatttgaacacatcgttattgttttgttatacactatttag--taaaatattgtcaaa |
249 |
Q |
| |
|
|||||||||||| |||||||||||| || |||||||||||||| ||||||||||||||| |
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| T |
25268816 |
agaatttgaacaaatcgttattgttctgctatacactatttagtataaaatattgtcaaa |
25268875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 2219590 - 2219525
Alignment:
| Q |
190 |
gtagaatttgaacacatcgttattgttttgttatacactatttagt--aaaatattgtcaaatagc |
253 |
Q |
| |
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|||||||||||||| |||||||||||| | | ||| ||||||||| |||||||||||||||||| |
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| T |
2219590 |
gtagaatttgaacatatcgttattgttctctgatatgctatttagtacaaaatattgtcaaatagc |
2219525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 265
Target Start/End: Original strand, 30560104 - 30560162
Alignment:
| Q |
210 |
tattgttttgttatacactatttagt---aaaatattgtcaaatagcagctatagtggc |
265 |
Q |
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|||||||||| |||||||||||||| ||||| ||||||||| |||||||||||||| |
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| T |
30560104 |
tattgttttgcgatacactatttagtaaaaaaatgttgtcaaattgcagctatagtggc |
30560162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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