View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12303_low_1 (Length: 456)

Name: NF12303_low_1
Description: NF12303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12303_low_1
NF12303_low_1
[»] scaffold0065 (5 HSPs)
scaffold0065 (177-441)||(44856-45138)
scaffold0065 (13-158)||(49808-49953)
scaffold0065 (254-418)||(50120-50284)
scaffold0065 (177-250)||(50003-50076)
scaffold0065 (122-163)||(44789-44830)
[»] chr7 (1 HSPs)
chr7 (289-441)||(3919583-3919735)
[»] chr8 (16 HSPs)
chr8 (273-418)||(3142620-3142765)
chr8 (289-418)||(2911582-2911711)
chr8 (270-418)||(2711737-2711885)
chr8 (275-418)||(3001875-3002018)
chr8 (292-418)||(9851554-9851680)
chr8 (277-418)||(2988861-2989002)
chr8 (285-418)||(2916582-2916715)
chr8 (175-234)||(3174051-3174110)
chr8 (176-254)||(2978920-2978998)
chr8 (270-418)||(2979942-2980090)
chr8 (296-380)||(3282972-3283056)
chr8 (176-239)||(3142850-3142913)
chr8 (176-239)||(3161804-3161867)
chr8 (176-234)||(13790633-13790691)
chr8 (296-402)||(13790826-13790932)
chr8 (178-234)||(3283187-3283243)
[»] chr6 (1 HSPs)
chr6 (277-418)||(18355258-18355399)
[»] chr1 (2 HSPs)
chr1 (284-418)||(10756111-10756245)
chr1 (176-258)||(10756313-10756395)
[»] chr4 (2 HSPs)
chr4 (284-418)||(8572575-8572709)
chr4 (176-258)||(8572421-8572503)
[»] chr3 (2 HSPs)
chr3 (284-418)||(28698535-28698669)
chr3 (176-258)||(28698381-28698463)


Alignment Details
Target: scaffold0065 (Bit Score: 133; Significance: 5e-69; HSPs: 5)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 177 - 441
Target Start/End: Original strand, 44856 - 45138
Alignment:
Q  177 ttttgaaagatggccgagcaaattccatatgctgttgctgctagtctcattaacaggttacttcattttcaacactt------------------tatca 258  Q
    |||||||  ||||| || ||||| |||||||||||||||||||| ||||||||||||||| |||||||||| |||||                  |||||    
T  44856 ttttgaagaatggctgaacaaatcccatatgctgttgctgctagcctcattaacaggttagttcattttcatcacttcatatatgcgtacatatatatca 44955  T
Q  259 tacacacttggttg-tatgctgaatattttcttttgacaggttggcttctgcggcctttcgtgaatttggacggattcatggtgttatgcacgagttgga 357  Q
    ||||||||| |||| ||||||||||||||||||||| ||||||||||||||| || |||| ||| |||||||||||||||||||||||||| ||||||||    
T  44956 tacacacttagttggtatgctgaatattttcttttg-caggttggcttctgcagcttttcatgagtttggacggattcatggtgttatgcatgagttgga 45054  T
Q  358 aaggcttaagaatactgttgaatctgtcagagctgtgctccttgatgctgaggacaaacaacaactgaatcatggtgtgcaaaa 441  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||  | |||||||||||||||    
T  45055 aaggcttaagaatactgttgaatccgtcagagctgtgctccttgatgctgaggagaaacaacaacaaagtcatggtgtgcaaaa 45138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 13 - 158
Target Start/End: Original strand, 49808 - 49953
Alignment:
Q  13 tgtgatctttcccactattggtcaattaacttaatcatttttctaagacgtaattacattttagtcctatccaatggttaatatgtatgtatactaccaa 112  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||    
T  49808 tgtgatctttcccactattggtcaattaacttgataatttttctaagacgtaattacatttttttcctatccaatggttaatatgtatgtatattaccaa 49907  T
Q  113 gagtataccatgcttttcctactctcaaactgatcactctgcaact 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  49908 gagtataccatgcttttcctactctcaaactgatcactctgcaact 49953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 254 - 418
Target Start/End: Original strand, 50120 - 50284
Alignment:
Q  254 tatcatacacacttggttgtatgctgaatattttcttttgacaggttggcttctgcggcctttcgtgaatttggacggattcatggtgttatgcacgagt 353  Q
    |||||||||||||| ||  ||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||| |||    
T  50120 tatcatacacacttagtaatatgctgaatattttcttttgaccggttggcttctgctgcttttcgtgaatttggacggattcatggtgttatgcacaagt 50219  T
Q  354 tggaaaggcttaagaatactgttgaatctgtcagagctgtgctccttgatgctgaggacaaacaa 418  Q
    || ||||||||||||||||||||||||| ||| ||||||||||||| |||||||| || ||||||    
T  50220 tgaaaaggcttaagaatactgttgaatccgtctgagctgtgctcctcgatgctgaagagaaacaa 50284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 50003 - 50076
Alignment:
Q  177 ttttgaaagatggccgagcaaattccatatgctgttgctgctagtctcattaacaggttacttcattttcaaca 250  Q
    ||||||||||||||  | ||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  50003 ttttgaaagatggctaaacaaatcccatatgctgttgctgctagcctcattaacaggttacttaattttcaaca 50076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 44789 - 44830
Alignment:
Q  122 atgcttttcctactctcaaactgatcactctgcaactttcaa 163  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44789 atgcttttcctactctcaaactgatcactctgcaactttcaa 44830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 289 - 441
Target Start/End: Complemental strand, 3919735 - 3919583
Alignment:
Q  289 ttttgacaggttggcttctgcggcctttcgtgaatttggacggattcatggtgttatgcacgagttggaaaggcttaagaatactgttgaatctgtcaga 388  Q
    |||| |||||||||||||||| || |||||||||||||| |||||| |||||||||||||  |||||||||||||||||| ||| ||| ||||  |||||    
T  3919735 tttttacaggttggcttctgcagcgtttcgtgaatttgggcggatttatggtgttatgcatcagttggaaaggcttaagagtacagttcaatccatcaga 3919636  T
Q  389 gctgtgctccttgatgctgaggacaaacaacaactgaatcatggtgtgcaaaa 441  Q
    ||||||||||||||||| ||||| ||||||||||  |||||||||||||||||    
T  3919635 gctgtgctccttgatgccgaggagaaacaacaacaaaatcatggtgtgcaaaa 3919583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 273 - 418
Target Start/End: Complemental strand, 3142765 - 3142620
Alignment:
Q  273 tatgctgaatattttcttttgacaggttggcttctgcggcctttcgtgaatttggacggattcatggtgttatgcacgagttggaaaggcttaagaatac 372  Q
    ||||||| | ||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||| ||| | ||  ||||||||||||| || ||    
T  3142765 tatgctggaaattttcttttgtcaggttggcttcagcggcctttcgtgaatttggacggatttatggtgtgatggatgaactggaaaggcttaaaaacac 3142666  T
Q  373 tgttgaatctgtcagagctgtgctccttgatgctgaggacaaacaa 418  Q
     ||||||||  ||| ||||||||||||||||||||| |||||||||    
T  3142665 agttgaatccatcaaagctgtgctccttgatgctgaagacaaacaa 3142620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 289 - 418
Target Start/End: Complemental strand, 2911711 - 2911582
Alignment:
Q  289 ttttgacaggttggcttctgcggcctttcgtgaatttggacggattcatggtgttatgcacgagttggaaaggcttaagaatactgttgaatctgtcaga 388  Q
    ||||||||||||||| ||||||||||||||||| |||||| | ||  ||||||||||| | ||||||||||||||||||||||| ||||| ||| |||||    
T  2911711 ttttgacaggttggcatctgcggcctttcgtgagtttggaggaatctatggtgttatgaatgagttggaaaggcttaagaatacagttgagtctatcaga 2911612  T
Q  389 gctgtgctccttgatgctgaggacaaacaa 418  Q
      ||| ||||||||||||||||||||||||    
T  2911611 aatgtactccttgatgctgaggacaaacaa 2911582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 270 - 418
Target Start/End: Complemental strand, 2711885 - 2711737
Alignment:
Q  270 ttgtatgctgaatattttcttttgacaggttggcttctgcggcctttcgtgaatttggacggattcatggtgttatgcacgagttggaaaggcttaagaa 369  Q
    |||| |||| |||||||||| ||  |||||||||||||||||||||||||||| ||||||||||| ||||||||||| | || |||||||  || |||||    
T  2711885 ttgtttgctaaatattttctgttcgcaggttggcttctgcggcctttcgtgaacttggacggatttatggtgttatggatgaattggaaatactcaagaa 2711786  T
Q  370 tactgttgaatctgtcagagctgtgctccttgatgctgaggacaaacaa 418  Q
     || ||||||||  ||| |||||| |||||||||||||| |||||||||    
T  2711785 cacagttgaatccatcaaagctgtcctccttgatgctgaagacaaacaa 2711737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 275 - 418
Target Start/End: Original strand, 3001875 - 3002018
Alignment:
Q  275 tgctgaatattttcttttgacaggttggcttctgcggcctttcgtgaatttggacggattcatggtgttatgcacgagttggaaaggcttaagaatactg 374  Q
    ||||||| ||||| ||||   |||||||||||||| ||||||  |||||||||| ||||| ||||||||||| | || ||||||||||||||||| || |    
T  3001875 tgctgaaaattttgttttcgtaggttggcttctgcagcctttgatgaatttggaaggattaatggtgttatggatgaattggaaaggcttaagaacacag 3001974  T
Q  375 ttgaatctgtcagagctgtgctccttgatgctgaggacaaacaa 418  Q
    |||||||  ||| ||||||||||||||||||||| |||||||||    
T  3001975 ttgaatccatcaaagctgtgctccttgatgctgaagacaaacaa 3002018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 292 - 418
Target Start/End: Complemental strand, 9851680 - 9851554
Alignment:
Q  292 tgacaggttggcttctgcggcctttcgtgaatttggacggattcatggtgttatgcacgagttggaaaggcttaagaatactgttgaatctgtcagagct 391  Q
    ||||||||| |  ||||| ||||| |||||||||||||||||  ||||||||||| | || ||||||| ||||||||| || ||||||||| | |||| |    
T  9851680 tgacaggttagggtctgctgccttgcgtgaatttggacggatcaatggtgttatgaatgaattggaaaagcttaagaacacggttgaatctattagagtt 9851581  T
Q  392 gtgctccttgatgctgaggacaaacaa 418  Q
    ||||||||||||||||| || ||||||    
T  9851580 gtgctccttgatgctgaagagaaacaa 9851554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 277 - 418
Target Start/End: Original strand, 2988861 - 2989002
Alignment:
Q  277 ctgaatattttcttttgacaggttggcttctgcggcctttcgtgaatttggacggattcatggtgttatgcacgagttggaaaggcttaagaatactgtt 376  Q
    ||||||||||||| || | |||||||||||||| |||||||||||||||||||| ||| ||||||| ||| | || || ||||| ||||| || ||  ||    
T  2988861 ctgaatattttctcttcataggttggcttctgcagcctttcgtgaatttggacgaatttatggtgtcatggatgaattagaaagacttaaaaacacaatt 2988960  T
Q  377 gaatctgtcagagctgtgctccttgatgctgaggacaaacaa 418  Q
    |||    |||||||||| ||||||||||||||||| ||||||    
T  2988961 gaagtcatcagagctgtactccttgatgctgaggagaaacaa 2989002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 285 - 418
Target Start/End: Complemental strand, 2916715 - 2916582
Alignment:
Q  285 tttcttttgacaggttggcttctgcggcctttcgtgaatttggacggattcatggtgttatgcacgagttggaaaggcttaagaatactgttgaatctgt 384  Q
    |||||||| |||| |||||||||| ||||| |||||||||| |||||||  ||||||||| | | ||| | || ||||||  | | || ||||||||  |    
T  2916715 tttctttttacagcttggcttctgaggcctgtcgtgaatttcgacggatatatggtgttaagtatgaggtcgataggcttcgggagacggttgaatccat 2916616  T
Q  385 cagagctgtgctccttgatgctgaggacaaacaa 418  Q
    || |||||||||||||||||||||||| ||||||    
T  2916615 caaagctgtgctccttgatgctgaggagaaacaa 2916582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 3174110 - 3174051
Alignment:
Q  175 atttttgaaagatggccgagcaaattccatatgctgttgctgctagtctcattaacaggt 234  Q
    |||||||||  ||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  3174110 atttttgaagaatggctgagcaaattccatatgctgttgctgcaagtctcattaacaggt 3174051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 176 - 254
Target Start/End: Original strand, 2978920 - 2978998
Alignment:
Q  176 tttttgaaagatggccgagcaaattccatatgctgttgctgctagtctcattaacaggttacttcattttcaacacttt 254  Q
    |||||||| |||||| || |||||||||||   ||||||| | |||||| ||||||||| |||||||||||||||||||    
T  2978920 tttttgaaggatggctgaacaaattccatacagtgttgctacaagtctcgttaacaggtgacttcattttcaacacttt 2978998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 418
Target Start/End: Original strand, 2979942 - 2980090
Alignment:
Q  270 ttgtatgctgaatattttcttttgacaggttggcttctgcggcctttcgtgaatttggacggattcatggtgttatgcacgagttggaaaggcttaagaa 369  Q
    |||| |||||||||||||||||    |||||||||||||  ||||| || ||||||||||||||| ||  ||| ||| | || || ||||| ||||| ||    
T  2979942 ttgtttgctgaatattttctttacgtaggttggcttctgttgccttacgcgaatttggacggattaataatgtgatggatgaattagaaagacttaaaaa 2980041  T
Q  370 tactgttgaatctgtcagagctgtgctccttgatgctgaggacaaacaa 418  Q
     ||  |||||    |||||||||| ||||||||||||||||| ||||||    
T  2980042 cacaattgaagtcatcagagctgtactccttgatgctgaggagaaacaa 2980090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 380
Target Start/End: Complemental strand, 3283056 - 3282972
Alignment:
Q  296 aggttggcttctgcggcctttcgtgaatttggacggattcatggtgttatgcacgagttggaaaggcttaagaatactgttgaat 380  Q
    |||||||||||||| ||||||||||||  |||||| |||  |||||||||| | ||||| ||||| ||||||||  |||||||||    
T  3283056 aggttggcttctgcagcctttcgtgaacatggacgaatttttggtgttatggatgagttagaaagacttaagaagtctgttgaat 3282972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 3142913 - 3142850
Alignment:
Q  176 tttttgaaagatggccgagcaaattccatatgctgttgctgctagtctcattaacaggttactt 239  Q
    |||||||| |||||| || |||||||| |||||||||||||| || ||| ||||||||||||||    
T  3142913 tttttgaaggatggctgaacaaattccttatgctgttgctgcaagcctcgttaacaggttactt 3142850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 3161867 - 3161804
Alignment:
Q  176 tttttgaaagatggccgagcaaattccatatgctgttgctgctagtctcattaacaggttactt 239  Q
    |||||||| |||||| || |||||||| |||||||||||||| || ||| ||||||||||||||    
T  3161867 tttttgaaggatggctgaacaaattccttatgctgttgctgcaagcctcgttaacaggttactt 3161804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 13790633 - 13790691
Alignment:
Q  176 tttttgaaagatggccgagcaaattccatatgctgttgctgctagtctcattaacaggt 234  Q
    |||||||| |||||| |||||||||||||||||||||||||  || ||| |||||||||    
T  13790633 tttttgaaggatggctgagcaaattccatatgctgttgctgaaagcctctttaacaggt 13790691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 402
Target Start/End: Original strand, 13790826 - 13790932
Alignment:
Q  296 aggttggcttctgcggcctttcgtgaatttggacggattcatggtgttatgcacgagttggaaaggcttaagaatactgttgaatctgtcagagctgtgc 395  Q
    |||||| |||| || |||||||||||| ||||||   ||  |||||||||| | ||||||||||| ||||||||  |||||||||  || |||| |||||    
T  13790826 aggttgacttcggcagcctttcgtgaacttggacaagtttttggtgttatggatgagttggaaagacttaagaactctgttgaatgcgtaagagttgtgc 13790925  T
Q  396 tccttga 402  Q
    |||||||    
T  13790926 tccttga 13790932  T

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Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 3283243 - 3283187
Alignment:
Q  178 tttgaaagatggccgagcaaattccatatgctgttgctgctagtctcattaacaggt 234  Q
    |||||| ||||||||||||||||||||| ||||||||||  || ||| |||||||||    
T  3283243 tttgaaggatggccgagcaaattccatacgctgttgctgaaagcctctttaacaggt 3283187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 277 - 418
Target Start/End: Original strand, 18355258 - 18355399
Alignment:
Q  277 ctgaatattttcttttgacaggttggcttctgcggcctttcgtgaatttggacggattcatggtgttatgcacgagttggaaaggcttaagaatactgtt 376  Q
    ||||||||||||| || | |||||||||||||| |||||||||||| ||||||| ||| ||||||| ||| | ||  |||||||||||||||| || |||    
T  18355258 ctgaatattttctcttcataggttggcttctgcagcctttcgtgaaattggacgaatttatggtgtcatggatgaactggaaaggcttaagaagacagtt 18355357  T
Q  377 gaatctgtcagagctgtgctccttgatgctgaggacaaacaa 418  Q
    |||||  ||| ||||||||||||||||||||| |||||||||    
T  18355358 gaatccatcaaagctgtgctccttgatgctgaagacaaacaa 18355399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 284 - 418
Target Start/End: Complemental strand, 10756245 - 10756111
Alignment:
Q  284 ttttcttttgacaggttggcttctgcggcctttcgtgaatttggacggattcatggtgttatgcacgagttggaaaggcttaagaatactgttgaatctg 383  Q
    ||||||||| | |||||||||||||  ||||| |||||||||||||||||| ||  ||| |   | || || ||||| |||| ||| || ||||||||      
T  10756245 ttttcttttcataggttggcttctgttgccttacgtgaatttggacggattaataatgtgaaagatgaattagaaagccttacgaagacagttgaatcca 10756146  T
Q  384 tcagagctgtgctccttgatgctgaggacaaacaa 418  Q
    |||||||||||||||||||||||||| ||||||||    
T  10756145 tcagagctgtgctccttgatgctgagaacaaacaa 10756111  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 176 - 258
Target Start/End: Complemental strand, 10756395 - 10756313
Alignment:
Q  176 tttttgaaagatggccgagcaaattccatatgctgttgctgctagtctcattaacaggttacttcattttcaacactttatca 258  Q
    ||||||||||||||| || ||||||||||| | |||||||   || ||||||||| ||||| |||||||||||| ||||||||    
T  10756395 tttttgaaagatggctgaacaaattccatacggtgttgctcaaagcctcattaacgggttaattcattttcaaccctttatca 10756313  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 284 - 418
Target Start/End: Original strand, 8572575 - 8572709
Alignment:
Q  284 ttttcttttgacaggttggcttctgcggcctttcgtgaatttggacggattcatggtgttatgcacgagttggaaaggcttaagaatactgttgaatctg 383  Q
    ||||||||| | |||||||||||||  ||||| |||||||||||| ||||| ||  ||| |   | || || ||||| |||| ||| || ||||||||      
T  8572575 ttttcttttcataggttggcttctgttgccttacgtgaatttggaaggattaataatgtgaaagatgaattagaaagtcttacgaagacagttgaatcca 8572674  T
Q  384 tcagagctgtgctccttgatgctgaggacaaacaa 418  Q
    ||||||||| |||||||||||||||| ||||||||    
T  8572675 tcagagctgcgctccttgatgctgagaacaaacaa 8572709  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 258
Target Start/End: Original strand, 8572421 - 8572503
Alignment:
Q  176 tttttgaaagatggccgagcaaattccatatgctgttgctgctagtctcattaacaggttacttcattttcaacactttatca 258  Q
    |||||||| |||||| || ||||||||| | | |||||||   || ||||||||| ||||| |||||||||||| ||||||||    
T  8572421 tttttgaaggatggctgaacaaattccacacggtgttgctcaaagcctcattaacgggttaattcattttcaaccctttatca 8572503  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 284 - 418
Target Start/End: Original strand, 28698535 - 28698669
Alignment:
Q  284 ttttcttttgacaggttggcttctgcggcctttcgtgaatttggacggattcatggtgttatgcacgagttggaaaggcttaagaatactgttgaatctg 383  Q
    ||||||||| | |||||||||||||  ||||| |||||||||||| ||||| ||  ||| |   | || || ||||| |||| ||| || ||||||||      
T  28698535 ttttcttttcataggttggcttctgttgccttacgtgaatttggaaggattaataatgtgaaagatgaattagaaagtcttacgaagacagttgaatcca 28698634  T
Q  384 tcagagctgtgctccttgatgctgaggacaaacaa 418  Q
    ||||||||| |||||||||||||||| ||||||||    
T  28698635 tcagagctgcgctccttgatgctgagaacaaacaa 28698669  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 258
Target Start/End: Original strand, 28698381 - 28698463
Alignment:
Q  176 tttttgaaagatggccgagcaaattccatatgctgttgctgctagtctcattaacaggttacttcattttcaacactttatca 258  Q
    |||||||| |||||| || ||||||||| | | |||||||   || ||||||||| ||||| |||||||||||| ||||||||    
T  28698381 tttttgaaggatggctgaacaaattccacacggtgttgctcaaagcctcattaacgggttaattcattttcaaccctttatca 28698463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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