View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12303_low_2 (Length: 281)
Name: NF12303_low_2
Description: NF12303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12303_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 37338248 - 37338066
Alignment:
| Q |
13 |
aagcagagagccaaggaaggagctacagaaactggactttgggtcagataagacaaacttcttcgcagacaaacttttccacagaaatctgaaactaaat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37338248 |
aagcagagagccaaggaaggagctacagaaactggactttgggtcagataagacaaacttcttcgcagacaaacttttccacagaaatctgaaactaaat |
37338149 |
T |
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| Q |
113 |
ttgtaaaaacagcaaatacaattaagggaaccatgtacatgtgaccattacgtgataggctgtctacacatacgtacgacttg |
195 |
Q |
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| T |
37338148 |
ttataaaaacagcaaatacaattaagggaaccatgtacatgtgaccattacgtgataggctgtctacacatacgtacgacttg |
37338066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 11299929 - 11300106
Alignment:
| Q |
13 |
aagcagagagccaaggaaggagctacagaaactggactttgggtcagataagacaaacttcttcgcagacaaacttttccacagaaatctgaaactaaat |
112 |
Q |
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|||||||||||||||| |||||||||| |||||||| ||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
11299929 |
aagcagagagccaagggaggagctacaaaaactggattttgggtcaga-----caaacttcttcaaagacaaacttctccacagaaatctgaaactaaat |
11300023 |
T |
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| Q |
113 |
ttgtaaaaacagcaaatacaattaagggaaccatgtacatgtgaccattacgtgataggctgtctacacatacgtacgacttg |
195 |
Q |
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| T |
11300024 |
ttgtaaaaacagcaaatacaattaaggaaaccatgtacacgtgaccattacgtgataggctgtctacacagacgcacgacttg |
11300106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 47967869 - 47968015
Alignment:
| Q |
19 |
agagccaaggaaggagctacagaaactggactttgggtcagataagacaaacttcttcgcagacaaacttttccacagaaatctgaaactaaatttgtaa |
118 |
Q |
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|||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
47967869 |
agagccaagggaggagctacagaaactggattttgggtcggataagacaaacttcttcacagacaaacttctccacagaaatctgaaactaaatttgtaa |
47967968 |
T |
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| Q |
119 |
aaacagcaaatacaattaagggaaccatgtacatgtgaccattacgt |
165 |
Q |
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| T |
47967969 |
aaacagcaaatacaattaagggaaccatgtacatgtgaccattacgt |
47968015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 15297062 - 15296897
Alignment:
| Q |
13 |
aagcagagagccaaggaaggagctacagaaactggactttgggtcagataagacaaacttcttcgcagacaaacttttccacagaaatctgaaactaaat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
15297062 |
aagcagagagccaaggaaggagctacagaaactggactttgggtcagataagacaaacttct----------------ccacagaaatctgaatctaaat |
15296979 |
T |
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| Q |
113 |
ttgtaaaaacagcaaatacaattaagggaaccatgtacatgtgaccattacgtgataggctgtctacacatacgtacgacttg |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| |
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| T |
15296978 |
ttgtaaaaacagcaaatacaattaagggaaccatgtacatgtgaccattacgtgatagg-tgtctacaaagacgtacgacttg |
15296897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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