View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12304_high_1 (Length: 901)
Name: NF12304_high_1
Description: NF12304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12304_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 589; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 173 - 882
Target Start/End: Complemental strand, 50202638 - 50201945
Alignment:
| Q |
173 |
ttcaccttatactagttgaatacctacgatttacgttgctcttaaccaaagcaacattgaaatttgaagcttcatattcttattctcaaagtctaataaa |
272 |
Q |
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| T |
50202638 |
ttcaacttatactagttgaatacctacgatttacgttgctcttacccaaagcaacattgaaatttgaagcttcatattcttattctcaaagtctaataaa |
50202539 |
T |
|
| Q |
273 |
agcagcctccagaggagaaagaacaaagtggattattttcaatgacagtgataaatgaacaccccacttccactttttgtactctccgtgacatctagtt |
372 |
Q |
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| T |
50202538 |
agcagcctccagaggagaaagaacaaagtggattattttcaatgacagtgataaatgaacaccccacttccactttttgtactctcggtgacatctagtt |
50202439 |
T |
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| Q |
373 |
aaccacgatcaaagatggataatttaatttacgatcaaatttacggttagttcaatagcgtgagttagccacaatacatgaattaaattaatcatgtttt |
472 |
Q |
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| T |
50202438 |
aaccacgatcaaagatggataatttaatttacg------------gttagttcaatagcgtgaattagccacaatacatgaactaaattaatcatgtttt |
50202351 |
T |
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| Q |
473 |
caactgaattttttatacacagtatcgtgggtgtgtgaaaaatgattttactacctgataatgcactgtgttaccaaattacaatcaaacacaaaattca |
572 |
Q |
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| T |
50202350 |
caactgaattttt-atacagagtatcgtgggtgtgtgaaaaatgattttactacctgataatgcattgtgttaccaaattacaatcaaacacaaaattca |
50202252 |
T |
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| Q |
573 |
ataaaattcttacagctctgctgtttgtgaatatccatccatccatgttgagaaagcaataacaaaaaacaagttcaatgatgaatgaatacaaagactg |
672 |
Q |
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| T |
50202251 |
ataaaattcttacatctctgctatttgtgaatatccatccat----gttgagaaagcaataacaaaaaacaagttcaatgatgaatgaatacaaagactg |
50202156 |
T |
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| Q |
673 |
tgtgctgtacattgtcaaatcaatctaaacgaatcttatgcacatgtggttactttctaacttgtgtataa-ttactaattaaccacgggatgagcggaa |
771 |
Q |
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| T |
50202155 |
tgtgctgtacattgtcaaatcaatctaaccgaatcttatgcacatgtggttactttctaacctgtgtataaattactaattaaccacgggatgagcggaa |
50202056 |
T |
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| Q |
772 |
tatccgtttgataatggcaactttaggggaaggagttctgtttaatggtgtaactttctttgagattactttaccaatagttgttgttgttgatattcta |
871 |
Q |
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| T |
50202055 |
tatccgtttgataatggcaactttaggggaaggagttctgtttaatggtgtaactttctttgagattactttaccaacagttgttgttgttgatattcta |
50201956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 7 - 160
Target Start/End: Complemental strand, 50202933 - 50202761
Alignment:
| Q |
7 |
cagaacctgtgattggtttatttctggataaggnnnnnnngcaagggaaagtgaaattatgacatggatgttcatggatcaaccgacactgtactc---- |
102 |
Q |
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| T |
50202933 |
cagaacccgtgattggtttatttctggataaggaaaaaaagcaagggaaagtgaaattatgacatggatgttcatggatcaaccgacactgtactctcct |
50202834 |
T |
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| Q |
103 |
---------------tactaatactactctcttcttttcaataaaacgaagttacctatttaagcttcaactt |
160 |
Q |
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| T |
50202833 |
aatggctcaaacaaatactaatactactctcttcttttcaataaaacgaagttacctatttaagcttcaactt |
50202761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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