View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12304_high_7 (Length: 391)
Name: NF12304_high_7
Description: NF12304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12304_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 6 - 378
Target Start/End: Original strand, 38218837 - 38219209
Alignment:
| Q |
6 |
aagttgcttttggaatagaaagaatatatgatatgctaaatgaggaagtaaagaaaggaataaaaaatgaagtacgtacgtagtaagcagtaacagttcc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38218837 |
aagttgcttttggaatagaaagaatatatgatatgctaaatgaggaagtaaagaaaggaataaaaaatgaagtacgtacgtagtaagcagtaacagttcc |
38218936 |
T |
|
| Q |
106 |
agcagaatttccagcaacaagtttgagttgcatatcaattctaccaaataaatactctttcttggattgaaagccagagccagaggttttatcaagagaa |
205 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
38218937 |
agcagaatttccagcaacaagtttaagttgcatatcaattctaccaaataaatactctttcttggattggaagccagagccagaagttttatcaagagaa |
38219036 |
T |
|
| Q |
206 |
agagatagaagttgaccaccattgaatatcttagcacggtggtcaccccaagttagatcaaagtcttggttgaagttagcagaacatgtagctaccatgg |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38219037 |
agagatagaagttgaccaccattgaatatcttagcacggtggtcaccccaagttagatcaaagtcttggttgaagttagcagaacatgtagctaccaagg |
38219136 |
T |
|
| Q |
306 |
agctaattatcataactccaatcagcatattgttcatgccaatagaagaagccatattaattaatttgcacag |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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|
| T |
38219137 |
agctaattatcataactccaatcagcatattgtttatgccaatagaagaaaccatattaattaatttgcacag |
38219209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 6 - 378
Target Start/End: Original strand, 38214616 - 38214988
Alignment:
| Q |
6 |
aagttgcttttggaatagaaagaatatatgatatgctaaatgaggaagtaaagaaaggaataaaaaatgaagtacgtacgtagtaagcagtaacagttcc |
105 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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|
| T |
38214616 |
aagttgctttcggaatagaaagaatatatgatatgctaaatgaggaagtaaagaaaggaataaaaaatgaagtacatacatagtaagcagtaacagttcc |
38214715 |
T |
|
| Q |
106 |
agcagaatttccagcaacaagtttgagttgcatatcaattctaccaaataaatactctttcttggattgaaagccagagccagaggttttatcaagagaa |
205 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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|
| T |
38214716 |
agcagaatttccagcaacaagtttaagttgcatatcaattctaccaaataaatactctttcttggattggaagccagagccagaagttttatcaagagaa |
38214815 |
T |
|
| Q |
206 |
agagatagaagttgaccaccattgaatatcttagcacggtggtcaccccaagttagatcaaagtcttggttgaagttagcagaacatgtagctaccatgg |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38214816 |
agagatagaagttgaccaccattgaatatcttagcacggtggtcaccccaagttagatcaaagtcttggttgaagttagcagaacatgtagctaccaagg |
38214915 |
T |
|
| Q |
306 |
agctaattatcataactccaatcagcatattgttcatgccaatagaagaagccatattaattaatttgcacag |
378 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||| |
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|
| T |
38214916 |
agctaattatcatgactccaatcagcatactgttaatgccaatagaataagccatattaattaatttgcacag |
38214988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 78 - 356
Target Start/End: Complemental strand, 42990854 - 42990576
Alignment:
| Q |
78 |
tacgtacgtagtaagcagtaacagttccagcagaatttccagcaacaagtttgagttgcatatcaattctaccaaataaatactctttcttggattgaaa |
177 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| || || |
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|
| T |
42990854 |
tacgtacatagtaagcagtgacggttccagcagagtttccagcaaccagtttgagttgcatatcaattctaccgaataagtactctttcttggactggaa |
42990755 |
T |
|
| Q |
178 |
gccagagccagaggttttatcaagagaaagagatagaagttgaccaccattgaatatcttagcacggtggtcaccccaagttagatcaaagtcttggttg |
277 |
Q |
| |
|
||||||||| ||| ||| || |||||||| || ||||| |||||||| |||||| ||||||||||||| || ||||| ||||||||||| ||||||| | |
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|
| T |
42990754 |
gccagagccggagactttgtcgagagaaagtgaaagaagctgaccaccgttgaatgtcttagcacggtgatcgccccatgttagatcaaaatcttggtag |
42990655 |
T |
|
| Q |
278 |
aagttagcagaacatgtagctaccatggagctaattatcataactccaatcagcatattgttcatgccaatagaagaag |
356 |
Q |
| |
|
|| || ||| |||||||||||| || |||||||| ||||||| |||||||||||||| |||||||| |||| |||||| |
|
|
| T |
42990654 |
aaatttgcacaacatgtagctatcaaggagctaactatcatagctccaatcagcatacagttcatgcgaatataagaag |
42990576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 82 - 311
Target Start/End: Complemental strand, 35016443 - 35016214
Alignment:
| Q |
82 |
tacgtagtaagcagtaacagttccagcagaatttccagcaacaagtttgagttgcatatcaattctaccaaataaatactctttcttggattgaaagcca |
181 |
Q |
| |
|
||||||||||||||| ||||| |||||||| || ||||||||||| || || |||||||||||||| ||||||| |||||| |||| |||| |||||| |
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|
| T |
35016443 |
tacgtagtaagcagtgacagtgccagcagagttgccagcaacaagcttaagctgcatatcaattctcccaaataggtactctctctttgatttgaagcca |
35016344 |
T |
|
| Q |
182 |
gagccagaggttttatcaagagaaagagatagaagttgaccaccattgaatatcttagcacggtggtcaccccaagttagatcaaagtcttggttgaagt |
281 |
Q |
| |
|
||||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||| |
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|
| T |
35016343 |
gagccagagactttgtcaagggaaagtgatagaagttgaccaccattgaatatcttagcacggttatcaccccatgttagatcaaagtcttggtagaaac |
35016244 |
T |
|
| Q |
282 |
tagcagaacatgtagctaccatggagctaa |
311 |
Q |
| |
|
|| ||| ||| ||||| ||||| ||||||| |
|
|
| T |
35016243 |
taccagcacaagtagccaccatagagctaa |
35016214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 92 - 273
Target Start/End: Complemental strand, 53492500 - 53492319
Alignment:
| Q |
92 |
gcagtaacagttccagcagaatttccagcaacaagtttgagttgcatatcaattctaccaaataaatactctttcttggattgaaagccagagccagagg |
191 |
Q |
| |
|
||||| ||||| |||||||| || |||| ||||||||| ||||||||||||||| | ||||| | || || || |||||||||||||| || ||||||| |
|
|
| T |
53492500 |
gcagtgacagtgccagcagagttgccaggaacaagtttaagttgcatatcaattttgccaaaaaggtattcatttttggattgaaagcctgaaccagagg |
53492401 |
T |
|
| Q |
192 |
ttttatcaagagaaagagatagaagttgaccaccattgaatatcttagcacggtggtcaccccaagttagatcaaagtcttg |
273 |
Q |
| |
|
||||||||||| |||| |||||||| |||| |||| ||| |||||||| || ||||| |||| |||||||||||| |
|
|
| T |
53492400 |
acttatcaagagatagagtaagaagttggccactgttgagtattttagcacgaccatccccccatgttatatcaaagtcttg |
53492319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 201
Target Start/End: Complemental strand, 53494834 - 53494719
Alignment:
| Q |
86 |
tagtaagcagtaacagttccagcagaatttccagcaacaagtttgagttgcatatcaattctaccaaataaatactctttcttggattgaaagccagagc |
185 |
Q |
| |
|
||||||||||| || ||||| ||||| ||||||| ||||| ||||| ||||||||||| | ||||| | ||| || |||||||||||||| ||||| | |
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|
| T |
53494834 |
tagtaagcagtgaccgttcctgcagagtttccaggtacaagcttgagctgcatatcaatgttgccaaagagatattcattcttggattgaaatccagaac |
53494735 |
T |
|
| Q |
186 |
cagaggttttatcaag |
201 |
Q |
| |
|
|||||| ||| ||||| |
|
|
| T |
53494734 |
cagaggctttgtcaag |
53494719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 89 - 223
Target Start/End: Original strand, 53489558 - 53489692
Alignment:
| Q |
89 |
taagcagtaacagttccagcagaatttccagcaacaagtttgagttgcatatcaattctaccaaataaatactctttcttggattgaaagccagagccag |
188 |
Q |
| |
|
|||||||| || || ||||| |||||||||| ||||||||| | |||||| ||||| | ||| | | ||| | || |||||||||||||||||||||| |
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|
| T |
53489558 |
taagcagtgactgtgccagctgaatttccaggaacaagtttaatttgcatgtcaatctttccataaagatattgattattggattgaaagccagagccag |
53489657 |
T |
|
| Q |
189 |
aggttttatcaagagaaagagatagaagttgacca |
223 |
Q |
| |
|
||||| |||| ||||| |||| ||||| |||||| |
|
|
| T |
53489658 |
aggttctatctagagacagagtaagaagctgacca |
53489692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 53501955 - 53501885
Alignment:
| Q |
74 |
gaagtacgtacgtagtaagcagtaacagttccagcagaatttccagcaacaagtttgagttgcatatcaat |
144 |
Q |
| |
|
||||||| |||||| || ||||| ||||| |||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
53501955 |
gaagtacttacgtaatatgcagtgacagtgccagcagagtttccagggacaagtttgagttgcatatcaat |
53501885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 209
Target Start/End: Complemental strand, 53498814 - 53498697
Alignment:
| Q |
92 |
gcagtaacagttccagcagaatttccagcaacaagtttgagttgcatatcaattctaccaaataaatactctttcttggattgaaagccagagccagagg |
191 |
Q |
| |
|
||||| ||||| |||||||| ||||| | |||||| || | |||||||||||| | |||||||| || || || |||||||||||||| || ||||||| |
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|
| T |
53498814 |
gcagtgacagtgccagcagagtttcctggaacaagcttaatctgcatatcaattttgccaaataagtattcatttttggattgaaagcctgaaccagagg |
53498715 |
T |
|
| Q |
192 |
ttttatcaagagaaagag |
209 |
Q |
| |
|
||| |||||||| |||| |
|
|
| T |
53498714 |
ctttgtcaagagatagag |
53498697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 273
Target Start/End: Complemental strand, 37188450 - 37188281
Alignment:
| Q |
104 |
ccagcagaatttccagcaacaagtttgagttgcatatcaattctaccaaataaatactctttcttggattgaaagccagagccagaggttttatcaagag |
203 |
Q |
| |
|
|||||||| || |||| ||||||||| || |||||||||||| | ||||| | || || || ||||||||||| ||||||||||||| ||| ||||||| |
|
|
| T |
37188450 |
ccagcagagttgccaggaacaagtttaagctgcatatcaattttgccaaaaaggtattcatttttggattgaaaaccagagccagaggatttgtcaagag |
37188351 |
T |
|
| Q |
204 |
aaagagatagaagttgaccaccattgaatatcttagcacggtggtcaccccaagttagatcaaagtcttg |
273 |
Q |
| |
|
| | || |||||||| ||| |||| ||| |||||||| || ||||| |||| |||||||||||| |
|
|
| T |
37188350 |
acaaagtaagaagttggccattgttgagtattttagcacgtccatccccccatgttatatcaaagtcttg |
37188281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 198
Target Start/End: Complemental strand, 16941552 - 16941458
Alignment:
| Q |
104 |
ccagcagaatttccagcaacaagtttgagttgcatatcaattctaccaaataaatactctttcttggattgaaagccagagccagaggttttatc |
198 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||| |||||| | ||||| || ||||| | ||||| |||||||||||||||| | |||||| |
|
|
| T |
16941552 |
ccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatttggaacgaaagccagagccagaagatttatc |
16941458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 198
Target Start/End: Complemental strand, 17012217 - 17012123
Alignment:
| Q |
104 |
ccagcagaatttccagcaacaagtttgagttgcatatcaattctaccaaataaatactctttcttggattgaaagccagagccagaggttttatc |
198 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||| |||||| | ||||| || ||||| | ||||| |||||||||||||||| | |||||| |
|
|
| T |
17012217 |
ccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatttggaacgaaagccagagccagaagatttatc |
17012123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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