View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12304_high_8 (Length: 367)
Name: NF12304_high_8
Description: NF12304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12304_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 351
Target Start/End: Original strand, 3521244 - 3521576
Alignment:
| Q |
19 |
catttagcataaagaataaaggggcagaatcggaaaagaatcaacttttggtgggaaataaagtcgtaagtcattcccatttcaaaagtttaaaccacaa |
118 |
Q |
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| T |
3521244 |
catttagcataaggaataaaggggtagaatcggaaaagaatcaacttttggtgggaaataaagtcgtaagtcattcccatttcaaaagtttaaaccacaa |
3521343 |
T |
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| Q |
119 |
aaacgtagtgggcaggcaggcatgttccggcttcattccaaacccaaccgacgcacgcagtcacgcactcttattctcgattcttccgtagcaaatttcc |
218 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3521344 |
aaacgtagtgggcaggcaggcatgttccagcttcattccaaacccaactgacgcacgcagtcacgcactcttattctcgattcttccgtagcaaatttcc |
3521443 |
T |
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| Q |
219 |
tacaaaaaccatttttcaaaaccctaaaattcttcaactcgttcatttcattcaattttttcgattgaaatatggaaggtaatggaatcgatgatgtgaa |
318 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3521444 |
tacaaaaaccaattttcaaaaccctaaaattcttcaactcgttcatttcattcaattttttcgattgaaatatggaaggtaatggaatcgatgatgtgaa |
3521543 |
T |
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| Q |
319 |
gattccgttgttacagtctacagaagaagataa |
351 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
3521544 |
gattccgttgttacagtctacagaagaagataa |
3521576 |
T |
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