View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12304_low_10 (Length: 273)
Name: NF12304_low_10
Description: NF12304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12304_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 40006702 - 40006441
Alignment:
| Q |
1 |
caacttgtgtcaacgtttgatttgatggtcatcaatgtatgttttcatgaagtaggtaaacttatttaggtataactttttatgttagcataaaagaagc |
100 |
Q |
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| T |
40006702 |
caacttgtgtcaacttttgatttgatggtcatcaatgtatgttttcatgaagtaggtaaacttatttaggtataactttttatgttagcataaaagaagc |
40006603 |
T |
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| Q |
101 |
cgtaattctggaagaaataataattgtactttaaacttcaaagaatgtaatagataaagatgaggcgtacaaatgccgattgaaaaacaattatggtcat |
200 |
Q |
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| T |
40006602 |
cgtaattctggaagaaataataattgtactttaaacttcaaagaatgtaatagataaagatgaggggtacaaatgccgattgaaaaacaattatggtcat |
40006503 |
T |
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| Q |
201 |
catttttcaagcagttaagtcctttgaaattttgataagctcataaataggtatggtgcaca |
262 |
Q |
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| T |
40006502 |
catttttcaagcagttaagtcctttgaaattttgataagcacataaataggtatggtgcaca |
40006441 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 50241250 - 50241295
Alignment:
| Q |
179 |
attgaaaaacaattatggtcatcatttttcaagcagttaagtcctt |
224 |
Q |
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| T |
50241250 |
attgtaaaacaattatggtcatcacttatcaagcagttaagtcctt |
50241295 |
T |
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