View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12304_low_15 (Length: 208)
Name: NF12304_low_15
Description: NF12304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12304_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 5662039 - 5662212
Alignment:
| Q |
19 |
agtatctaatagagttgtgtctttaatgtgtagagattaattgtctgtttggtttagcgttctatggcctaaacgtgcgtctcaaagaccactagccgtg |
118 |
Q |
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| T |
5662039 |
agtatctaatagagttgtgtctttaatgtgcagagattaattgtctgtttggtttagcgttctatggcctaaacgtgtgtctcaaagaccactagccgtg |
5662138 |
T |
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| Q |
119 |
caaaagcagaagctgaaaaacatgacatccacggtaactgtgcggttttctaccgctattttgcttaagacaac |
192 |
Q |
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| T |
5662139 |
caaaagcagaagctgaaaaacatgacatccacggtaactgtgcggttttctaccgctattttgcttaagacaac |
5662212 |
T |
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Target: chr5; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 14844394 - 14844463
Alignment:
| Q |
63 |
ctgtttggtttagcgttctatggcctaaacgtgcgtctcaaagaccactagccgtgcaaaagcagaagct |
132 |
Q |
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||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
14844394 |
ctgtttggtttagtgttgtatggcctaaacgtgcgtctcaaaggccactagccgtgaaaaagcagaagct |
14844463 |
T |
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