View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12304_low_3 (Length: 500)
Name: NF12304_low_3
Description: NF12304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12304_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 6 - 397
Target Start/End: Complemental strand, 3369414 - 3369026
Alignment:
| Q |
6 |
aggagcagagaatgcatctaagatggtttcaactgttgacaacatcatgtttatcacagctggtggtaaggaaagaactccaaaagaatatgagagttta |
105 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3369414 |
aggatcagagaatgcatctaagatggtttcaactgttgacaacatcatgtttatcacagctggtggtaaggaaagaactccaaaagaatatgagagttta |
3369315 |
T |
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| Q |
106 |
ggtaaacaatgtggattttctaaacttcaagttgtttgtcgtgctttctccatccttggagtgatggaactctacaaataaccaagtcacatataggatc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3369314 |
ggtaaacaatgtggattttctaaacttcaagttgtttgtcgtgctttctccatccttggagtgatggaactctacaaataaccaagtcacatctaggatc |
3369215 |
T |
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| Q |
206 |
aataagtcacacatcgtttgtaatatatcatattaaatgtggccatgtactttatattttctagatttcaagttgtttgttgcactttattttattatta |
305 |
Q |
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| T |
3369214 |
aataagtcacacatcgtttgtaatatatcata-taaatgtgg-catgtactttatattttctagatttcaaattgtttgttgcactttattttattatta |
3369117 |
T |
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| Q |
306 |
tcatagtgttctactcnnnnnnnntaatgtcatggagttttacaaataagtgaatcgctttaattgatcgttaattgagaatatgacgtgca |
397 |
Q |
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| T |
3369116 |
ccatagtgttctactc-aaaaaaataatgtcatggagttttacaaataagtgaatcgctttaattgatcgttaattgagaatatgacgtgca |
3369026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 16 - 196
Target Start/End: Complemental strand, 3389380 - 3389200
Alignment:
| Q |
16 |
aatgcatctaagatggtttcaactgttgacaacatcatgtttatcacagctggtggtaaggaaagaactccaaaagaatatgagagtttaggtaaacaat |
115 |
Q |
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| T |
3389380 |
aatgcatctaagatgatttcaattgttgataacatgatgtttatcacagctggtggtaaggaaagaacttcaaaagaatttgaaagtttgggtaaacatt |
3389281 |
T |
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| Q |
116 |
gtggattttctaaacttcaagttgtttgtcgtgctttctccatccttggagtgatggaactctacaaataaccaagtcaca |
196 |
Q |
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| T |
3389280 |
ctggattttctaaattccaagttgtttgtcgtgctttctccatccttggagtgatggaactttacaaataaataagtcaca |
3389200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 3402667 - 3402496
Alignment:
| Q |
16 |
aatgcatctaagatggtttcaactgttgacaacatcatgtttatcacagctggtggtaaggaaagaactccaaaagaatatgagagtttaggtaaacaat |
115 |
Q |
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| T |
3402667 |
aatgcatctaagatgatttcaattgttgataacatgatgtttatcacagctggtggtaaggaaagaacttcaaaagaatttgagattttgggtaaacaat |
3402568 |
T |
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| Q |
116 |
gtggattttctaaacttcaagttgtttgtcgtgctttctccatccttggagtgatggaactctacaaataac |
187 |
Q |
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| T |
3402567 |
ctggattttctaaagtcaaagttgtttgtcgtgctttctccatcctcggagtgatggaactttataaataac |
3402496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 3297892 - 3297713
Alignment:
| Q |
16 |
aatgcatctaagatggtttcaactgttgacaacatcatgtttatcacagctggtggtaaggaaagaactccaaaagaatatgagagtttaggtaaacaat |
115 |
Q |
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||||||||| | ||| |||||| | | || |||||||||||||||||||||||||| |||||||||||||||||||| ||||| | |||||||||| | |
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| T |
3297892 |
aatgcatctcaaatgatttcaattctcgataacatcatgtttatcacagctggtggaaaggaaagaactccaaaagagtatgaaaatttaggtaaaaggt |
3297793 |
T |
|
| Q |
116 |
gtggattttctaaacttcaagttgtttgtcgtgctttctccatccttggagtgatggaactctacaaataaccaagtcac |
195 |
Q |
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| T |
3297792 |
ctggattttctaagcttcaagttgcttgttgtgctttctccatcatcggagtgatggaactttacaaataaccaagtcac |
3297713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 32 - 186
Target Start/End: Complemental strand, 3359226 - 3359072
Alignment:
| Q |
32 |
tttcaactgttgacaacatcatgtttatcacagctggtggtaaggaaagaactccaaaagaatatgagagtttaggtaaacaatgtggattttctaaact |
131 |
Q |
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|||||| || ||| ||||| |||||| ||||||||||||| | |||||||| | || |||||||||| ||| || |||| || |||||||||||| | |
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| T |
3359226 |
tttcaattgctgataacatgatgtttgtcacagctggtggaatggaaagaagtgtgaaggaatatgagactttgggaaaacgatctggattttctaagat |
3359127 |
T |
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| Q |
132 |
tcaagttgtttgtcgtgctttctccatccttggagtgatggaactctacaaataa |
186 |
Q |
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| T |
3359126 |
tcaagttgtttgtcttgctttctctatcattggagtgatggaactttacaaataa |
3359072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 301
Target Start/End: Complemental strand, 3389210 - 3389116
Alignment:
| Q |
206 |
aataagtcacacatcgtttgtaatatatcatattaaatgtggccatgtactttatattttctagatttcaagttgtttgttgcactttattttatt |
301 |
Q |
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|||||||||||||||| ||||||||| ||||| ||||||| |||||||| |||| | ||||||| ||||||| | |||||| || |||||| |||| |
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| T |
3389210 |
aataagtcacacatcgattgtaatatgtcata-taaatgttgccatgtattttaaactttctaggtttcaagatttttgttacattttattatatt |
3389116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 174
Target Start/End: Complemental strand, 3348042 - 3347932
Alignment:
| Q |
64 |
gctggtggtaaggaaagaactccaaaagaatatgagagtttaggtaaacaatgtggattttctaaacttcaagttgtttgtcgtgctttctccatccttg |
163 |
Q |
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| T |
3348042 |
gctggtggaaaagaaagaactcctaaagaatatgaaatttttgctcaacgctctggattttcaagacttgaagttgtttgctgtgctttctctattattg |
3347943 |
T |
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| Q |
164 |
gagtgatggaa |
174 |
Q |
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| T |
3347942 |
gagttatggaa |
3347932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 46 - 186
Target Start/End: Original strand, 23994531 - 23994671
Alignment:
| Q |
46 |
aacatcatgtttatcacagctggtggtaaggaaagaactccaaaagaatatgagagtttaggtaaacaatgtggattttctaaacttcaagttgtttgtc |
145 |
Q |
| |
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| T |
23994531 |
aacatcatgtttctcacggttggtggaaaggaaagaactctgaaagaatatgaaagtttgggtaaacgatctggatttgttaagtttcaagctgcttgtc |
23994630 |
T |
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| Q |
146 |
gtgctttctccatccttggagtgatggaactctacaaataa |
186 |
Q |
| |
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||| ||||||||| || | |||||||||||| ||||||||| |
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| T |
23994631 |
gtgttttctccattctcgaagtgatggaactttacaaataa |
23994671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 43365657 - 43365720
Alignment:
| Q |
21 |
atctaagatggtttcaactgttgacaacatcatgtttatcacagctggtggtaaggaaagaact |
84 |
Q |
| |
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||||||| | ||||||||| ||||||| ||||||||||||||| |||||| | |||||||||| |
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| T |
43365657 |
atctaagcttgtttcaactcttgacaatctcatgtttatcacagttggtggaagggaaagaact |
43365720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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