View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12304_low_4 (Length: 460)
Name: NF12304_low_4
Description: NF12304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12304_low_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 18 - 460
Target Start/End: Complemental strand, 21829938 - 21829496
Alignment:
| Q |
18 |
aaagagaagttgttgtaccacaagttgttgatcaaaataaaactcaagggaagaataaatgggttaaggttaggcaaagtgggaaatcacaaaaagagct |
117 |
Q |
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| T |
21829938 |
aaagagaagttgttgtaccacaagttgttgatcaaaataaaactcaagggaagaataaatgggttaaggttaggcaaagtgggaaatcacaaaaagagct |
21829839 |
T |
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| Q |
118 |
ttcagctttgcatttatgtcaagaatttcaagcacatgaagggtgtatttggactatgaagtttagtttggatggaaggtttttggctactgctggtgag |
217 |
Q |
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| T |
21829838 |
ttcagctttgcatttatgtcaagaatttcaagcacatgaagggtgtatttggactatgaagtttagtttggatggaaggtttttggctactgctggtgag |
21829739 |
T |
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| Q |
218 |
gataaagtgatacatatttgggaagttcaagaatgtgaggttatgagtatgagaggtgaggaagggaatcttactcctattcatccttctttgctttctt |
317 |
Q |
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| T |
21829738 |
gataaagtgatacatatttgggaagttcaagaatgtgaggttatgagtatgagaggtgaggaagggaatcttactcctattcatccttctttgctttctt |
21829639 |
T |
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| Q |
318 |
ctatggaaagagnnnnnnntgttgatactcatagtttggttaagaagaaagggaaatttggaagtaaaagaggaggagggtcagcagctattcctgaata |
417 |
Q |
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| T |
21829638 |
caatggaaagagaaaaaaatgttgatactcatagtttggttaagaagaaagggaaatttggaagtaaaagaggaggagggtcagcagctattcctgaata |
21829539 |
T |
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| Q |
418 |
tgttcatgtgcctgaaaatgtttttactttctctgagaaacct |
460 |
Q |
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| T |
21829538 |
tgttcatgtgcctgaaaatgtttttactttctctgagaaacct |
21829496 |
T |
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