View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12304_low_6 (Length: 398)

Name: NF12304_low_6
Description: NF12304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12304_low_6
NF12304_low_6
[»] chr1 (3 HSPs)
chr1 (19-373)||(39210040-39210377)
chr1 (232-364)||(24036791-24036927)
chr1 (45-116)||(7673907-7673978)
[»] chr8 (3 HSPs)
chr8 (19-206)||(27510612-27510799)
chr8 (232-392)||(27513624-27513784)
chr8 (273-391)||(8675126-8675245)
[»] chr3 (1 HSPs)
chr3 (261-370)||(9461180-9461298)
[»] chr2 (2 HSPs)
chr2 (242-354)||(38950770-38950885)
chr2 (75-116)||(27592764-27592805)
[»] chr6 (2 HSPs)
chr6 (306-358)||(18331979-18332031)
chr6 (237-304)||(18331878-18331945)
[»] chr4 (2 HSPs)
chr4 (65-203)||(42091774-42091912)
chr4 (22-180)||(31949210-31949368)


Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 19 - 373
Target Start/End: Complemental strand, 39210377 - 39210040
Alignment:
Q  19 ttgaggatacaccaactcatctccatgcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  39210377 ttgaggatacaccaactcatctccatgcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagc 39210278  T
Q  119 cgataaaattctttaaaaaatgtccaaccgtcggtaaaatagactttctcgttcctctttttgacagccacctcaaactcattcttgtatacatcaaatg 218  Q
      ||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39210277 acataaaattctttaaaaa-tgtccaaccgtcagtaaaatagactttcacgttcctctttttgacagccacctcaaagtcattcttgtatacatcaaatg 39210179  T
Q  219 gagcatccattataatatatattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaattcaaaaaactcaacc 318  Q
    || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||| ||||||    
T  39210178 gaacctccattataatatatattctacactcacaacattggaatctaatctattcatattcaaattagttc----------------aaaaaaatcaacc 39210095  T
Q  319 tcttcatcatcaggcttgcagatagtttcatcaacttcccttgtattttcaaggt 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39210094 tcttcatcatcaggcttgcagatagtttcatcaacttcccttgtattttcaaggt 39210040  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 232 - 364
Target Start/End: Original strand, 24036791 - 24036927
Alignment:
Q  232 aatatatattctacactcacaacattggaatctaatctattcatattcaaa-ttagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatca 330  Q
    ||||||||||||||||||| ||||||| ||||| || |||| |||| |||| |||| ||||||||||||||| | |||||||||||||||||||||||||    
T  24036791 aatatatattctacactcaaaacattgaaatctgatttatttatatacaaatttagatcaaaacaatcaaaact-aaaaaactcaacctcttcatcatca 24036889  T
Q  331 ----ggcttgcagatagtttcatcaacttcccttgtat 364  Q
        |||||||||||||||||||||||||  |||||||    
T  24036890 ggatggcttgcagatagtttcatcaacttagcttgtat 24036927  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 7673907 - 7673978
Alignment:
Q  45 gcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaa 116  Q
    ||||||| ||||||||||||||||||| ||||||||||| |||||| |  |||| |||||||||||||||||    
T  7673907 gcatatttctaacttcaaacagaaaaatgtgtcgatttgaaaaaataattgtgacccaagtaccagccaaaa 7673978  T

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Target: chr8 (Bit Score: 153; Significance: 6e-81; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 27510612 - 27510799
Alignment:
Q  19 ttgaggatacaccaactcatctccatgcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagt 118  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||     
T  27510612 ttgaggatacaccaactcatctccatgtatattcctaacttcaaacagaaaaaggtgtcgattttcaaaaatgacagtgatccaagtaccagccaaaagc 27510711  T
Q  119 cga-taaaattctttaaaaaatgtccaaccgtcggtaaaatagactttctcgttcctctttttgacagccacctcaaactcattcttgt 206  Q
    | | ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27510712 ccattaaaattcttt-aaaaatgtccaaccgtcagtaaaatagactttctcgttcctctttttgacagccacctcaaactcattcttgt 27510799  T

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Target: chr8; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 232 - 392
Target Start/End: Original strand, 27513624 - 27513784
Alignment:
Q  232 aatatatattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcag 331  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27513624 aatatatattctacactcacatcattgaaatctaatctattcatattcaaattagttcaaaacactcaaaattcaaaaaactcaacctcttcatcatcag 27513723  T
Q  332 gcttgcagatagtttcatcaacttcccttgtattttcaaggtcttcggcaccttcttctct 392  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27513724 gcttgcaggtagtttcatcaacttcccttgtattttcaaggtcttcggcaccttcttctct 27513784  T

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Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 273 - 391
Target Start/End: Complemental strand, 8675245 - 8675126
Alignment:
Q  273 catattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttcccttgtattttcaa-g 371  Q
    |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| ||||      
T  8675245 catattgaaattaggtcaaaacaatcaaaatttaaaaaactcaacctcttcatcatcaggcttgcaaacagtctcatcaacttcccttgtattctcaatc 8675146  T
Q  372 gtcttcggcaccttcttctc 391  Q
    ||||||||||||||||||||    
T  8675145 gtcttcggcaccttcttctc 8675126  T

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Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 261 - 370
Target Start/End: Complemental strand, 9461298 - 9461180
Alignment:
Q  261 atctaatctattcatattcaaattagttcaaaacaatcaaaattca---------aaaaactcaacctcttcatcatcaggcttgcagatagtttcatca 351  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| |         |||||||||||||||||||||||||||||||||||||||||||||    
T  9461298 atctaatctaatcatattcaaattaggtcaaaacaatcaaaattaacaaaaaaaaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatca 9461199  T
Q  352 acttcccttgtattttcaa 370  Q
    |||||| |  |||||||||    
T  9461198 acttccttcttattttcaa 9461180  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 242 - 354
Target Start/End: Original strand, 38950770 - 38950885
Alignment:
Q  242 ctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt------caaaaaactcaacctcttcatcatcaggctt 335  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||||| |||||||||||||||||       ||||||||||||||||   |||||||||||    
T  38950770 ctacactcacaactttgaaatctaatctaatcatattcaaattaggtcaaaacaatcaaaattaaaaaaaaaaaaactcaacctct---tcatcaggctt 38950866  T
Q  336 gcagatagtttcatcaact 354  Q
    |||||||||||||||||||    
T  38950867 gcagatagtttcatcaact 38950885  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 27592805 - 27592764
Alignment:
Q  75 gtcgatttgcaaaaatgacagtgatccaagtaccagccaaaa 116  Q
    ||||||||||||||||||||||| |||||| |||| ||||||    
T  27592805 gtcgatttgcaaaaatgacagtggtccaagaaccaaccaaaa 27592764  T

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Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 18331979 - 18332031
Alignment:
Q  306 aaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttccc 358  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18331979 aaaaaactcaacctcttcatcatcaggcttgtagatagtttcatcaacttccc 18332031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 18331878 - 18331945
Alignment:
Q  237 atattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt 304  Q
    ||||||||||||||||| |||| ||||||||||| ||||||||||||||  |||||||||||||||||    
T  18331878 atattctacactcacaatattgaaatctaatctaatcatattcaaattatgtcaaaacaatcaaaatt 18331945  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 65 - 203
Target Start/End: Original strand, 42091774 - 42091912
Alignment:
Q  65 agaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagtc-gataaaattctttaaaaaatgtccaaccgtcggtaaaatagact 163  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||  | |  ||||||||| |||| | | |||||| ||   |||||| |||    
T  42091774 agaaaaaggcgtcgatttgcaaaaatgacagtgatccaagaaccagccaaaatcctgtaaaaattcttcaaaaca-gcccaaccatcatcaaaataaact 42091872  T
Q  164 ttctcgttcctctttttgacagccacctcaaactcattct 203  Q
    ||| ||||||||||||  ||||| ||||||| ||||||||    
T  42091873 ttcccgttcctcttttccacagctacctcaatctcattct 42091912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 180
Target Start/End: Complemental strand, 31949368 - 31949210
Alignment:
Q  22 aggatacaccaactcatctccatgcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagtcga 121  Q
    |||||||||||| | | ||||||||| ||| || ||  | | ||||||||| ||||||||||||||||| |  |||||||||| |||| ||||||  | |    
T  31949368 aggatacaccaattaaactccatgcagatttcttaccaccatcagaaaaagatgtcgatttgcaaaaataattgtgatccaagcaccacccaaaatccca 31949269  T
Q  122 -taaaattctttaaaaaatgtccaaccgtcggtaaaatagactttctcgttcctcttttt 180  Q
     ||||  ||||| |||||||||||||| || |||||||| ||  || ||||| |||||||    
T  31949268 ttaaagctcttt-aaaaatgtccaaccatcagtaaaataaaccctcccgttcttcttttt 31949210  T

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