View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12305_high_1 (Length: 981)
Name: NF12305_high_1
Description: NF12305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12305_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 832; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 832; E-Value: 0
Query Start/End: Original strand, 19 - 939
Target Start/End: Original strand, 40001447 - 40002374
Alignment:
| Q |
19 |
aattatatcttcgataatcaattttctctccataatcatcaactcttgaatgagaagcttgttctccatggtaggtgtagtacccttgatcgatttcatg |
118 |
Q |
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| T |
40001447 |
aattatatcttcgataatcaattttctctccataatcatcaactcttgaatgagaagctggttctccatggtaggtgtagtacccttgatcgatttcatg |
40001546 |
T |
|
| Q |
119 |
gtaaaaatcgttgttacgtagagcacatcctgatgaaagacatttatattttctgcgactttttgtttttcttattactctgaaaatcataggcagaaga |
218 |
Q |
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| T |
40001547 |
gtaaaaatcgttgttacgtagagcacatcctgatgaaagacatttatattttctgcgactttttgtttttcttattactctgaaaatcataggcagaaga |
40001646 |
T |
|
| Q |
219 |
ccctccataatatgtatcacaattcacaaccttaattccttcctttttgttcttgaagaataataggcacagagagagatagaatgttggtttttgaaga |
318 |
Q |
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| T |
40001647 |
ccctccataatatgtatcacaattcacaaccttaattccttcctttttgttcttgaagaataataagcacagagagagatagaatgttggtttttgaaga |
40001746 |
T |
|
| Q |
319 |
tttttaaaatggataattataggcacttgttgtgttaggtgagtttcgattttattatttttatacaagtataaatttatatatgaatgtgttatatggt |
418 |
Q |
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| T |
40001747 |
tttttaaa-tggataattataggcacttgttgggttaggtgagtttcgattttattatttttatacaagtataaatttatatatgaatgtgttatatggt |
40001845 |
T |
|
| Q |
419 |
gacatgttttgtgtgctaaaaggacaatgaagcatattaatttagttaatatgagttttgactgggctagcagggcaaggcgcatgccaatgaaaccaat |
518 |
Q |
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| T |
40001846 |
gacatgttttgtgtgctaaaaaaacaatgaagcatattaatttagttaatatgagttttgactgggctagcagggcaatgcgcatgccaatgaaaccaat |
40001945 |
T |
|
| Q |
519 |
ccgaatgctgttccaaggaagaagttgcccaagttagttatttttaggacaatttgactttttatttggtctatctgtaaatgacatatttgtgatgtct |
618 |
Q |
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| T |
40001946 |
ccgaatgctgttctaaggaagaagttgcccaagttagttatttttaggacaatttgactttttatttggtctatctgtaaatgacatatttgtgatgtct |
40002045 |
T |
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| Q |
619 |
acatgtaaacaactatgcttttaatttattcctaacctcattattcctcaaaaagacttttacccctaaaagttagtggttatgatctggattctagaag |
718 |
Q |
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| T |
40002046 |
acatgtaaacaactatgcttttaatttattcctaacctcattattcctcaaaaagacttttacccctgaaagttagtggttatgatctggattctagaag |
40002145 |
T |
|
| Q |
719 |
aaggtctttacatcaactaattaccgtggacgcaaagctgcatctgaaacgtaattaacatgaatggataagtaaagtttttctcactgga--------t |
810 |
Q |
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| T |
40002146 |
aaggtctttacatcaactaattaccgtgggcgcaaaactgcatctgaaacgtaatcaacatgaatggataagtgaagtttttctcactcgatgatgaact |
40002245 |
T |
|
| Q |
811 |
ggtaaaaacacaaattaataatataggtgaagatgccaacataacaatatcaatattactagataagctaagtttcacacacaataaagtttagaaagtt |
910 |
Q |
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| T |
40002246 |
gataaaaacacaaactaataatataggtgaagatgccaacataacaatatcaatattactagataagctaagtttcacacacaataaagtttagaaagtt |
40002345 |
T |
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| Q |
911 |
aatgtcactttttggttaagtggtaaaac |
939 |
Q |
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| T |
40002346 |
aatgtcactttttggttaagtggtaaaac |
40002374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 935 - 970
Target Start/End: Original strand, 40003705 - 40003740
Alignment:
| Q |
935 |
aaaacaacaatccttagactcgaaagtcacaggttc |
970 |
Q |
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| T |
40003705 |
aaaacaacaatccttagactcgaaaatcacaggttc |
40003740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 1e-25; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 43103350 - 43103438
Alignment:
| Q |
19 |
aattatatcttcgataatcaattttctctccataatcatcaactcttgaatgagaagcttgttctccatggtaggtgtagtacccttga |
107 |
Q |
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| T |
43103350 |
aattatatcttcgataatcaattttgtctgcataatcatcaacccttgaattagaagattgttctccatggtagttgtagtgcccttga |
43103438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 548 - 598
Target Start/End: Original strand, 43104966 - 43105016
Alignment:
| Q |
548 |
caagttagttatttttaggacaatttgactttttatttggtctatctgtaa |
598 |
Q |
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| T |
43104966 |
caagttagttatttttaggactatttgactttttatttggactatctgtaa |
43105016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 412 - 505
Target Start/End: Original strand, 43104824 - 43104918
Alignment:
| Q |
412 |
atatggtgacatgttttgtgtgctaa-aaggacaatgaagcatattaatttagttaatatgagttttgactgggctagcagggcaaggcgcatgc |
505 |
Q |
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| T |
43104824 |
atatgatgacatgttttgtgtgccaagaagaacaatgtaacacattaatttagttaatataagtttcgactgagctagtagggcatggtgcatgc |
43104918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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