View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12305_high_11 (Length: 399)
Name: NF12305_high_11
Description: NF12305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12305_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 7 - 378
Target Start/End: Complemental strand, 26251188 - 26250811
Alignment:
| Q |
7 |
caaggcataggccggggtgtagcggcctagggctcatgcccgtaaactgccccaa-------ttttaannnnnnngctaaaggggatgtatattgtgatg |
99 |
Q |
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| T |
26251188 |
caaggcataggccgggatgcagcggcctagggctcatgcccgtaaactgccccaaatattattttttttttttttgctaaaggggatgtatattgtgatg |
26251089 |
T |
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| Q |
100 |
ctgccccacttaagtgagcggaaaactgctccttatatttagcaagtaactcataaaagtaggcataacacctttgacctagcaagtaaaatgaccacat |
199 |
Q |
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| T |
26251088 |
ctgccccacttaagtgagtggaaaactgctccttatatttagcaagtaactcataaaagtaggcataacacctttgacctagcaagtaaaatgaccacat |
26250989 |
T |
|
| Q |
200 |
ggtcaaggaataaattagaaaaataagtgtagtgcaaatagatgtacatgtggtaaaaccgatagtaaatgttaaaaatattttaattaattccgaaata |
299 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||| |
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| T |
26250988 |
ggtcaaggaataaattaaaaaaataagtgtagtgcaaatagatgtacatgtggtaaaaccgatagtaaatatt-aaaatatattaattaattccgaaata |
26250890 |
T |
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| Q |
300 |
agttaaaacaagaaaaatgcataatgtatataaaatacggggtgttacatcgagtaggattgttctagaaactgtagtg |
378 |
Q |
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| T |
26250889 |
agttaaaacaagaaaaatgcataatgtatataaaatacggggtgttacatcgagtaggattgttctagaaattgtagtg |
26250811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 121 - 309
Target Start/End: Original strand, 28064264 - 28064464
Alignment:
| Q |
121 |
aaaactgctccttatatttagcaagtaactcat-aaaagtaggcataacacctttgacctagcaagtaaaatgaccacatggtcaaggaataaattag-- |
217 |
Q |
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| T |
28064264 |
aaaactgctccttatatttagcaagtaacccatgaaaaataggcataacacctttgacccagcaagtaaaatgaccacatggtcaagggataaatcagaa |
28064363 |
T |
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| Q |
218 |
----------aaaaataagtgtagtgcaaatagatgtacatgtggtaaaaccgatagtaaatgttaaaaatattttaattaattccgaaataagttaaaa |
307 |
Q |
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||||| |||| |||||||| ||| |||||| ||||||||||| |||||||| || ||||||| |||||||||||| ||||||| ||||| |
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| T |
28064364 |
aaaaaaaaaaaaaaaaaagtatagtgcaagtaggtgtacacgtggtaaaaccagtagtaaatatt-aaaatatattaattaattccaaaataaggtaaaa |
28064462 |
T |
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| Q |
308 |
ca |
309 |
Q |
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|| |
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| T |
28064463 |
ca |
28064464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 121 - 309
Target Start/End: Original strand, 27977736 - 27977935
Alignment:
| Q |
121 |
aaaactgctccttatatttagcaagtaactcat-aaaagtaggcataacacctttgacctagcaagtaaaatgaccacatggtcaaggaataaat----- |
214 |
Q |
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| T |
27977736 |
aaaactgctccttatatttagcaagtaacccatgaaaaataggcataacacctttgacccagcaagtaaaatgaccacatggtcaagggataaatcaaga |
27977835 |
T |
|
| Q |
215 |
------tagaaaaataagtgtagtgcaaatagatgtacatgtggtaaaaccgatagtaaatgttaaaaatattttaattaattccgaaataagttaaaac |
308 |
Q |
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| T |
27977836 |
aaaaaaaaaaaaaaaaagtatagtgcaagtaggtgtacacgtggtaaaaccagtagtaaatatt-aaaatatattaattaattccaaaataaggtaaaac |
27977934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 8311926 - 8312008
Alignment:
| Q |
110 |
taagtgagcggaaaactgctccttatatttagcaagtaactcataaaagtaggcataacacctttgacctagcaagtaaaatg |
192 |
Q |
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| T |
8311926 |
taagtgagtggaaaactgctccttgtatttagcaagtaacccatgataataggcataatacttttgacccagcaagtaaaatg |
8312008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 316
Target Start/End: Original strand, 8312039 - 8312115
Alignment:
| Q |
239 |
agatgtacatgtggtaaaaccgatagtaaatgttaaaaatattttaattaattccgaaataagttaaaacaagaaaaa |
316 |
Q |
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| T |
8312039 |
agatgtacacgtggtaaaaccggtagtgaatattaaaa-tatattaattaattctaaaataagttaaaacacgaaaaa |
8312115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 110 - 184
Target Start/End: Complemental strand, 33793171 - 33793097
Alignment:
| Q |
110 |
taagtgagcggaaaactgctccttatatttagcaagtaactcataaaagtaggcataacacctttgacctagcaa |
184 |
Q |
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| T |
33793171 |
taagtgagtggaaaactgctccatatatttagcatgtaacccataataacaggcataacacatttgacccagcaa |
33793097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 35336317 - 35336349
Alignment:
| Q |
7 |
caaggcataggccggggtgtagcggcctagggc |
39 |
Q |
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||||||||||||||||||| ||||||||||||| |
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| T |
35336317 |
caaggcataggccggggtgcagcggcctagggc |
35336349 |
T |
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