View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12305_high_12 (Length: 385)

Name: NF12305_high_12
Description: NF12305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12305_high_12
NF12305_high_12
[»] chr2 (3 HSPs)
chr2 (10-370)||(3530719-3531083)
chr2 (159-370)||(3551316-3551529)
chr2 (153-356)||(3544211-3544414)


Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 10 - 370
Target Start/End: Complemental strand, 3531083 - 3530719
Alignment:
Q  10 gcagagacactctctgttt----ttcttaataaatgaagtgaaatgatgaaaaacacaaacatacacgtacataaattatcgatgttatctattttggtg 105  Q
    |||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3531083 gcagagacactctctgtttgtttttcttaataaatgaagtgaaatgatgaaaaacacaaacatacacgtacataaattatcgatgttatctattttggtg 3530984  T
Q  106 caagtctataattaatcaattagttaatataatgctacaacttatagatcatgacatactaagatcgccggtccttcttgcgcatctgatactatcatct 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3530983 caagtctataattaatcaattagttaatataatgctacaacttatagatcatgacatactaagatcgccggtccttcttgcacatctgatactatcatct 3530884  T
Q  206 aatatcttcttcagattatatttgtagacaaatccatcatccatgagctttgttgaggccaatttgattgccctgtttggcccttccaaatacctacaac 305  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3530883 aatatcttcttcagattatatttgtagacaaatccattatctatgagctttgttgaggccaatttgattgccctgtttggcccttccaaatacctacaac 3530784  T
Q  306 caaatgtcaatttttgttagattttagacatattttcataaacatgttattagtgctaatatata 370  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  3530783 caaatgtcaatttttgttagattttagacatattttcataagcatgttattagtgcaaatatata 3530719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 159 - 370
Target Start/End: Complemental strand, 3551529 - 3551316
Alignment:
Q  159 acatactaagatcgccggtccttcttgcgcatctgatactatcatctaatatcttcttcagattatatttgtagacaaatccatcatccatgagctttgt 258  Q
    |||||||| ||||||||  |||||||  |||||||||| |||||||||||||| ||||||||| |||||||||||||||||||| ||| ||||||||  |    
T  3551529 acatactatgatcgccgacccttcttaagcatctgatattatcatctaatatcatcttcagatcatatttgtagacaaatccattatctatgagcttgtt 3551430  T
Q  259 tgaggccaatttgattgccctgtttggcccttccaaatacctacaaccaaatgtcaatttttgttagatttt--agacatattttcataaacatgttatt 356  Q
    |||| || |||||||| |||||||| ||||||||||||||||||| | ||||  ||| | || ||||| |||  ||| |||||||||||| |||||||||    
T  3551429 tgagtcccatttgattcccctgttttgcccttccaaatacctacagcaaaataccaaatatttttagagtttagagagatattttcataagcatgttatt 3551330  T
Q  357 agtgctaatatata 370  Q
    ||||| ||||||||    
T  3551329 agtgcaaatatata 3551316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 153 - 356
Target Start/End: Complemental strand, 3544414 - 3544211
Alignment:
Q  153 atcatgacatactaagatcgccggtccttcttgcgcatctgatactatcatctaatatcttcttcagattatatttgtagacaaatccatcatccatgag 252  Q
    ||||| ||||||||| |||||| ||||||||| ||||| ||| |||||| |||| |||| |||| |||| |||||| |||||||| || |  ||| ||||    
T  3544414 atcattacatactaaaatcgcccgtccttcttccgcatttgacactatcgtctagtatcatcttgagatcatatttatagacaaaccctttgtccgtgag 3544315  T
Q  253 ctttgttgaggccaatttgattgccctgtttggcccttccaaatacctacaaccaaatgtcaatttttgttagattttagacatattttcataaacatgt 352  Q
    ||||||||| ||| ||||||||||  |||||||| |||||||||||||| || || ||||||| | |||| |||||||||| || |||||| || ||| |    
T  3544314 ctttgttgatgcccatttgattgctttgtttggctcttccaaatacctaaaatcagatgtcaaatattgtaagattttagatattttttcaaaagcatat 3544215  T
Q  353 tatt 356  Q
    ||||    
T  3544214 tatt 3544211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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