View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12305_high_15 (Length: 362)
Name: NF12305_high_15
Description: NF12305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12305_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 7 - 346
Target Start/End: Original strand, 36330822 - 36331164
Alignment:
| Q |
7 |
aaatagaaatagaagggatgagttgcctgaaacatgaataattatattggcttatttgactttatcgtagtttatacatatgatcgattaatgataatta |
106 |
Q |
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| T |
36330822 |
aaatagaaatagaagggatgagttgcctgaaacatgaagaattatattggcttatttgactttatcgtagtttatacatatgatcgattaatgataatta |
36330921 |
T |
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| Q |
107 |
cttaacgaaactatttctatccaaacagagcgttaaaaggaaaagctaccttgaaatgacaaggaatgcgatcctttacggaaacagggtcgtagcgctt |
206 |
Q |
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| T |
36330922 |
cttaaggaaactatttctatccaaacagagcgttaaaaggaaaagctaccttgaaatgagaaggaatgcgatcctttacggaaacagggtcgtagcgctt |
36331021 |
T |
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| Q |
207 |
attcttcatagactcttcctctgcatcttgttcctcgtattcata---aacatcagtggtggcttcatcgaaatggacattggtttgaatctgtttgttc |
303 |
Q |
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| T |
36331022 |
attcttcatagactcttcctctgcatcttgttcctcgtattcataaacaacatcagtggtggcttcatcgaaatggacattggtttgaatctgtttgttc |
36331121 |
T |
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| Q |
304 |
aaagatgaaggcaaacgaggattggttttcgactttttacttc |
346 |
Q |
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| T |
36331122 |
aaagatgaaggcgaacgaggattggttttcgactttttacttc |
36331164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 44371826 - 44371862
Alignment:
| Q |
288 |
ttgaatctgtttgttcaaagatgaaggcaaacgagga |
324 |
Q |
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| T |
44371826 |
ttgaatctcttttttcaaagatgaaggcaaacgagga |
44371862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 44380681 - 44380717
Alignment:
| Q |
288 |
ttgaatctgtttgttcaaagatgaaggcaaacgagga |
324 |
Q |
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| T |
44380681 |
ttgaatctcttttttcaaagatgaaggcaaacgagga |
44380717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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