View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12305_high_17 (Length: 355)
Name: NF12305_high_17
Description: NF12305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12305_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 45353451 - 45353129
Alignment:
| Q |
19 |
gtcacagtatcatattcatatgtttttcaattgataaatgttagtggttaatttgttagatgcgaaaccannnnnnnactagcaaatttctaaagttcat |
118 |
Q |
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| T |
45353451 |
gtcacagtatcagattcatatgtttttcaattgataaatgttagtggttaatttgttagatgcgaaaccatttttttactagcaaatttctgaagttcat |
45353352 |
T |
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| Q |
119 |
attgtgtatattcaaaggttattacgtgatcaatggcaagtacaaacatctctacaattgatgaactgcatgtgactcacgctgaaccgattcgagttca |
218 |
Q |
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| T |
45353351 |
attgtgtatattcaaaggttattacgtgatcaatggcaagtacaaacatctctacaattgatgaactgcatgtgactcaaggagaaccgattcgagttca |
45353252 |
T |
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| Q |
219 |
acccgcggaagaaacagaaaagggactctactttctttcaaaccttgaccaaaatattgcagttccaatgcgcacaatttattgctttaaatcagaatct |
318 |
Q |
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| T |
45353251 |
acccgcggaagaaacagaaaagggactctactttctttcaaaccttgaccaaaatattgcagttccaatgcgcacaatttattgctttaaatcagaatct |
45353152 |
T |
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| Q |
319 |
agaggaaatgaagaagctgcaca |
341 |
Q |
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| T |
45353151 |
agaggaaatgaagaagctgcaca |
45353129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 312
Target Start/End: Complemental strand, 40497852 - 40497778
Alignment:
| Q |
238 |
aagggactctactttctttcaaaccttgaccaaaatattgcagttccaatgcgcacaatttattgctttaaatca |
312 |
Q |
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| T |
40497852 |
aagggactctactttctttctaaccttgaccaaaatatagcatatccagttcgtacaatttactgttataaatca |
40497778 |
T |
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