View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12305_high_18 (Length: 338)
Name: NF12305_high_18
Description: NF12305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12305_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 8e-92; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 95 - 277
Target Start/End: Complemental strand, 29758222 - 29758040
Alignment:
| Q |
95 |
cacaattaagaaacaacacttgcctggggattgtactctgcagtaggagcttgaagcttaatggattgaaggtccaacttacaatctaaattgacagttg |
194 |
Q |
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| T |
29758222 |
cacaattaagaaacaacacttgcctggggattgtactctgcagtaggagcttgaagcttaatggattgaaggtccaacttacaatccaaattcacagttg |
29758123 |
T |
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| Q |
195 |
acacaatatttctggcaatacaaattcaaatcatattcatttttcgatattcaaaagcacaaaagcaattccattattaatcg |
277 |
Q |
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| T |
29758122 |
acacaatatttctggcaatacaaattcaaatcatattcatttttcgatattcaaaaacacaaaagcaattccattattaatcg |
29758040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 95 - 255
Target Start/End: Original strand, 29851875 - 29852035
Alignment:
| Q |
95 |
cacaattaagaaacaacacttgcctggggattgtactctgcagtaggagcttgaagcttaatggattgaaggtccaacttacaatctaaattgacagttg |
194 |
Q |
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| T |
29851875 |
cacaattaaaaaacataacttgcctggggattatactctgcagtaggagcttgaagcttgatggaattaaggtccaacttacagtccaaattgactgtcg |
29851974 |
T |
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| Q |
195 |
acacaatatttctggcaatacaaattcaaatcatattcatttttcgatattcaaaagcaca |
255 |
Q |
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| T |
29851975 |
acacaatatttctggcaataaaaatacaaataacatacatttttagatatgctaaagcaca |
29852035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 29758342 - 29758254
Alignment:
| Q |
11 |
cacagacatcagcactgcagacaaatgtccaacgattatgataacatatcaaacatgtaactattcataattgatttcagataacacaa |
99 |
Q |
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| T |
29758342 |
cacagacatcagcactgcagacaaatttccaacgattatgataacatatcaaacatgtaactattgataattgatttcagataacacaa |
29758254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 29851706 - 29851790
Alignment:
| Q |
11 |
cacagacatcagcactgcagacaaatgtccaacgattatgataacatat-caaacatgtaactattcataattgatttcagataa |
94 |
Q |
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| T |
29851706 |
cacagacatcagcactgcagacaaatgtccaacgatcatgataacatataaaaaaatgtaactatttataattgatttcagataa |
29851790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 146
Target Start/End: Original strand, 283249 - 283300
Alignment:
| Q |
95 |
cacaattaagaaacaacacttgcctggggattgtactctgcagtaggagctt |
146 |
Q |
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| T |
283249 |
cacaattaataaacaaaacatgcttggggattgtactctgcagtagaagctt |
283300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 322
Target Start/End: Complemental strand, 29758023 - 29757995
Alignment:
| Q |
294 |
tgggatactgacataatggtgggagcaat |
322 |
Q |
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| T |
29758023 |
tgggatactgacataatggtgggagcaat |
29757995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 105 - 208
Target Start/End: Complemental strand, 27012879 - 27012776
Alignment:
| Q |
105 |
aaacaacacttgcctggggattgtactctgcagtaggagcttgaagcttaatggattgaaggtccaacttacaatctaaattgacagttgacacaatatt |
204 |
Q |
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|||||| |||||||| |||||||||||||||| || ||||||||||| ||| |||| || ||||||||||| || ||||||||||||||||||||||| |
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| T |
27012879 |
aaacaaaacttgccttgggattgtactctgcattacgagcttgaagcgcaattgatttcagctccaacttacagtccaaattgacagttgacacaatatt |
27012780 |
T |
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| Q |
205 |
tctg |
208 |
Q |
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|||| |
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| T |
27012779 |
tctg |
27012776 |
T |
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