View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12305_high_22 (Length: 292)

Name: NF12305_high_22
Description: NF12305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12305_high_22
NF12305_high_22
[»] chr8 (19 HSPs)
chr8 (18-225)||(13152430-13152645)
chr8 (56-225)||(9256359-9256528)
chr8 (18-225)||(27190695-27190910)
chr8 (104-225)||(30791494-30791615)
chr8 (92-225)||(16532667-16532800)
chr8 (92-225)||(14446838-14446971)
chr8 (56-219)||(24333681-24333850)
chr8 (56-194)||(28846588-28846726)
chr8 (92-225)||(21958518-21958651)
chr8 (108-194)||(10467786-10467872)
chr8 (125-225)||(10014471-10014571)
chr8 (103-183)||(42446935-42447015)
chr8 (150-225)||(32372022-32372097)
chr8 (150-225)||(32342880-32342955)
chr8 (150-225)||(32355367-32355442)
chr8 (150-225)||(32359486-32359561)
chr8 (155-225)||(40146046-40146116)
chr8 (152-221)||(34228269-34228338)
chr8 (157-215)||(2826349-2826407)
[»] chr5 (12 HSPs)
chr5 (19-225)||(3055407-3055621)
chr5 (87-225)||(1280379-1280517)
chr5 (111-225)||(203875-203989)
chr5 (34-225)||(23244606-23244805)
chr5 (56-225)||(11852682-11852854)
chr5 (92-225)||(8785788-8785921)
chr5 (104-225)||(26540691-26540812)
chr5 (18-225)||(27168839-27169046)
chr5 (105-225)||(22541905-22542025)
chr5 (104-225)||(22712935-22713048)
chr5 (135-225)||(2228964-2229054)
chr5 (150-225)||(19518978-19519053)
[»] chr4 (12 HSPs)
chr4 (18-225)||(31944540-31944755)
chr4 (90-225)||(53693070-53693205)
chr4 (92-216)||(27364889-27365013)
chr4 (92-225)||(12211262-12211395)
chr4 (92-225)||(4325418-4325550)
chr4 (131-225)||(3074414-3074508)
chr4 (92-186)||(55464735-55464829)
chr4 (92-225)||(42843713-42843849)
chr4 (150-225)||(8897962-8898037)
chr4 (178-225)||(1147591-1147638)
chr4 (97-155)||(1147523-1147581)
chr4 (150-225)||(10632680-10632757)
[»] chr7 (16 HSPs)
chr7 (29-225)||(9230336-9230540)
chr7 (100-225)||(26493750-26493875)
chr7 (18-193)||(43727920-43728103)
chr7 (92-225)||(27387342-27387475)
chr7 (92-225)||(19399984-19400117)
chr7 (56-225)||(23179922-23180093)
chr7 (92-225)||(45197650-45197782)
chr7 (96-228)||(18375416-18375546)
chr7 (93-225)||(38575325-38575457)
chr7 (92-225)||(8638620-8638754)
chr7 (153-225)||(14088815-14088887)
chr7 (153-225)||(14398833-14398905)
chr7 (159-225)||(25024596-25024662)
chr7 (92-132)||(23804627-23804667)
chr7 (153-221)||(25491674-25491742)
chr7 (182-225)||(9557784-9557827)
[»] chr1 (16 HSPs)
chr1 (18-225)||(14498822-14499036)
chr1 (56-225)||(52753856-52754025)
chr1 (92-225)||(9637127-9637260)
chr1 (92-225)||(25017392-25017525)
chr1 (93-225)||(26272965-26273097)
chr1 (92-225)||(48606648-48606781)
chr1 (111-225)||(35949014-35949128)
chr1 (92-225)||(40864755-40864888)
chr1 (42-225)||(30559041-30559232)
chr1 (104-225)||(21973824-21973945)
chr1 (92-186)||(17127445-17127539)
chr1 (92-225)||(32379892-32380021)
chr1 (112-225)||(30054847-30054960)
chr1 (153-225)||(17874845-17874917)
chr1 (188-225)||(28463197-28463234)
chr1 (248-284)||(14499037-14499073)
[»] scaffold0019 (1 HSPs)
scaffold0019 (100-225)||(134890-135015)
[»] chr6 (9 HSPs)
chr6 (29-225)||(12180561-12180765)
chr6 (87-225)||(11970961-11971098)
chr6 (93-225)||(25599159-25599294)
chr6 (90-225)||(32442010-32442142)
chr6 (92-225)||(24074418-24074551)
chr6 (125-225)||(3050902-3051002)
chr6 (92-225)||(25340451-25340584)
chr6 (139-225)||(30621226-30621311)
chr6 (134-221)||(1296557-1296644)
[»] scaffold0178 (1 HSPs)
scaffold0178 (92-225)||(17746-17879)
[»] chr3 (12 HSPs)
chr3 (92-225)||(31989035-31989168)
chr3 (18-225)||(3856912-3857127)
chr3 (92-225)||(43137133-43137265)
chr3 (18-224)||(15667897-15668111)
chr3 (92-225)||(53710404-53710537)
chr3 (92-225)||(51261985-51262118)
chr3 (92-225)||(24908429-24908562)
chr3 (92-225)||(37381905-37382038)
chr3 (150-225)||(22934835-22934910)
chr3 (157-225)||(24988849-24988917)
chr3 (105-172)||(43585836-43585903)
chr3 (189-225)||(38282510-38282546)
[»] scaffold0007 (1 HSPs)
scaffold0007 (92-225)||(259924-260057)
[»] chr2 (13 HSPs)
chr2 (18-225)||(12539498-12539712)
chr2 (96-225)||(19951867-19951996)
chr2 (92-225)||(35649696-35649829)
chr2 (105-225)||(22483568-22483688)
chr2 (92-225)||(33453224-33453357)
chr2 (104-225)||(34526370-34526491)
chr2 (104-225)||(22464688-22464809)
chr2 (115-210)||(13308745-13308840)
chr2 (18-225)||(34317509-34317718)
chr2 (125-224)||(34907624-34907723)
chr2 (150-225)||(18425997-18426072)
chr2 (188-225)||(45121334-45121371)
chr2 (150-225)||(26656377-26656452)
[»] scaffold0198 (1 HSPs)
scaffold0198 (120-225)||(1430-1535)
[»] scaffold0168 (1 HSPs)
scaffold0168 (104-225)||(15832-15953)
[»] scaffold0015 (1 HSPs)
scaffold0015 (92-225)||(214197-214330)
[»] scaffold0012 (1 HSPs)
scaffold0012 (104-225)||(197123-197244)
[»] scaffold0002 (1 HSPs)
scaffold0002 (19-225)||(435384-435605)
[»] scaffold0726 (1 HSPs)
scaffold0726 (157-225)||(954-1022)


Alignment Details
Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 13152645 - 13152430
Alignment:
Q  18 ggaagtacacaagttatcaagccatgtcaataagctagtaa-----tcttataagcccgtgagaaagaattatga---atatgatcaacgatgtgtggtt 109  Q
    |||||||||| ||||||||||||||||||| ||||||||||     ||||||||||||||||||||||||| | |   | |||||||||| |||||||||    
T  13152645 ggaagtacaccagttatcaagccatgtcaaaaagctagtaaaataatcttataagcccgtgagaaagaattgttaccaacatgatcaacgctgtgtggtt 13152546  T
Q  110 caatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaaggg 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||  |||||||||||||||||||||||||||||||    
T  13152545 caatgacttgatgatatgttacatcgagcgggagatattcaagtcatttgatgatgttggtattattccaacattcatcgcaaagaggtctcggaaaggg 13152446  T
Q  210 catttacctcctaatt 225  Q
    ||||||||||||||||    
T  13152445 catttacctcctaatt 13152430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 56 - 225
Target Start/End: Original strand, 9256359 - 9256528
Alignment:
Q  56 taatcttataagcccgtgagaaagaattatgaatatgatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtca 155  Q
    ||||||||||||| |||||||||||||||  ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9256359 taatcttataagcacgtgagaaagaattaccaatatgatcaatgatgtgtggtttaatgacttgatgatatgttacatcgagcgggagatattcaagtca 9256458  T
Q  156 cttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggcatttacctcctaatt 225  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||||||||||||||    
T  9256459 cttgatgatgttgatataattcgaacattcatcgcaaagaggtctcgcaaatgacatttacctcctaatt 9256528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 27190695 - 27190910
Alignment:
Q  18 ggaagtacacaagttatcaagccatgtcaataagctagtaa-----tcttataagcccgtgagaaagaattatga---atatgatcaacgatgtgtggtt 109  Q
    |||||| ||| |||| |||||||||||||| ||||||||||     ||||||||||||| ||||||||||| | |   | | ||||||||||||||||||    
T  27190695 ggaagtccaccagttgtcaagccatgtcaacaagctagtaaaataatcttataagcccgcgagaaagaattgttacaaacaagatcaacgatgtgtggtt 27190794  T
Q  110 caatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaaggg 209  Q
    |||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||| | | ||| ||||| |||||||| ||||| ||||||     
T  27190795 caatgacttgatgatatgttgcacctagcgggagatattcaagtcacttgatgatgttgatattactcgaatattcaccgcaaagatgtctcagaaagga 27190894  T
Q  210 catttacctcctaatt 225  Q
    ||||||||||||||||    
T  27190895 catttacctcctaatt 27190910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 104 - 225
Target Start/End: Complemental strand, 30791615 - 30791494
Alignment:
Q  104 gtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcgg 203  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||| ||| ||||||||| ||||||||||||||||    
T  30791615 gtggttcaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgacattgatattattcgaacattcaccgcaaagaggtctcgg 30791516  T
Q  204 aaagggcatttacctcctaatt 225  Q
    |||||||||||||| |||||||    
T  30791515 aaagggcatttaccacctaatt 30791494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 16532800 - 16532667
Alignment:
Q  92 gatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgca 191  Q
    ||||||||||||||||||||||||||||||||||||||| | | || | |||||||||||||||||||||||||||||||| |||  |||||||| ||||    
T  16532800 gatcaacgatgtgtggttcaatgacttgatgatatgttataccaagtgagagatattcaagtcacttgatgatgttgatattattcaaacattcaccgca 16532701  T
Q  192 aagaggtctcggaaagggcatttacctcctaatt 225  Q
    ||||| | ||||||||||||||||||||||||||    
T  16532700 aagagatatcggaaagggcatttacctcctaatt 16532667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 92 - 225
Target Start/End: Original strand, 14446838 - 14446971
Alignment:
Q  92 gatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgca 191  Q
    |||||||||| |||||||||||||||||||||||||||||| | || | |||||||||||||||||||||||||||||||| |||  ||||||||  |||    
T  14446838 gatcaacgatttgtggttcaatgacttgatgatatgttacaccaagagagagatattcaagtcacttgatgatgttgatattattctaacattcactgca 14446937  T
Q  192 aagaggtctcggaaagggcatttacctcctaatt 225  Q
    ||||||||||||||||| |||| |||||||||||    
T  14446938 aagaggtctcggaaaggacattcacctcctaatt 14446971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 56 - 219
Target Start/End: Original strand, 24333681 - 24333850
Alignment:
Q  56 taatcttataagcccgtgagaaagaattatga---atatgatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaag 152  Q
    |||||||||||||||||||||||||||| | |   | | |||||||||||| || ||||||||||| |||||||||||||  ||||||||||||||||||    
T  24333681 taatcttataagcccgtgagaaagaattgttaccaacaagatcaacgatgtatgattcaatgactttatgatatgttacactgagcgggagatattcaag 24333780  T
Q  153 tcacttgatgatgttgatataatttgaac---attcatcgcaaagaggtctcggaaagggcatttacctc 219  Q
    ||||||||||||||| |||| ||| ||||   ||||| | |||||||||||||||||| | |||||||||    
T  24333781 tcacttgatgatgttaatattattcgaacattattcaccacaaagaggtctcggaaagagaatttacctc 24333850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 56 - 194
Target Start/End: Original strand, 28846588 - 28846726
Alignment:
Q  56 taatcttataagcccgtgagaaagaattatga---atatgatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaag 152  Q
    |||||||||||| ||||||||||||||| | |   | | ||||||||||||||||||||||||||||||||| |   |||||||||||||||||||||||    
T  28846588 taatcttataagtccgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatattcaag 28846684  T
Q  153 tcacttgatgatgttgatataatttgaacattcatcgcaaag 194  Q
    |||||||||||||||||||| ||| ||||||||| |||||||    
T  28846685 tcacttgatgatgttgatattattcgaacattcaccgcaaag 28846726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 92 - 225
Target Start/End: Original strand, 21958518 - 21958651
Alignment:
Q  92 gatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgca 191  Q
    ||||||| || ||||||| |||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||| ||| ||||||| |    |    
T  21958518 gatcaacaatatgtggttgaatgacttgatgatatgttacaccgagcaggagatattcgagtcacttgatgatgttgatattattcgaacattaactcaa 21958617  T
Q  192 aagaggtctcggaaagggcatttacctcctaatt 225  Q
    |||||||| ||||||||| |||||||||||||||    
T  21958618 aagaggtcgcggaaagggaatttacctcctaatt 21958651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 108 - 194
Target Start/End: Original strand, 10467786 - 10467872
Alignment:
Q  108 ttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaag 194  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||| |||||| ||||| ||||    
T  10467786 ttcaatgacttgatgatatgttacatcgagcgggagataatcaagtcatttgatgatgttgatattattcgaacatgcatcggaaag 10467872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 125 - 225
Target Start/End: Complemental strand, 10014571 - 10014471
Alignment:
Q  125 atgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggcatttacctcctaat 224  Q
    |||||||| ||||||| ||||||||| ||||||||||||||||||||| |||  |||||||| || |||||| | | |||||||||||||||||||||||    
T  10014571 atgttacaccgagcggaagatattcatgtcacttgatgatgttgatattattcaaacattcaccggaaagagattttggaaagggcatttacctcctaat 10014472  T
Q  225 t 225  Q
    |    
T  10014471 t 10014471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 42446935 - 42447015
Alignment:
Q  103 tgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacat 183  Q
    ||||||| |||||| |||| |||||||||||||||||| |||||||||||||||||||||| ||| |||| ||||||||||    
T  42446935 tgtggttgaatgacgtgattatatgttacatcgagcggaagatattcaagtcacttgatgacgtttatattatttgaacat 42447015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 150 - 225
Target Start/End: Original strand, 32372022 - 32372097
Alignment:
Q  150 aagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggcatttacctcctaatt 225  Q
    ||||||||||||||||||||||| ||| ||||||||| ||||||||||||||  ||||| ||||||||||||||||    
T  32372022 aagtcacttgatgatgttgatattattcgaacattcaccgcaaagaggtctcaaaaaggtcatttacctcctaatt 32372097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 225
Target Start/End: Original strand, 32342880 - 32342955
Alignment:
Q  150 aagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggcatttacctcctaatt 225  Q
    ||||||||||||||||||||||| ||| |||||||||  ||||| |||||||  ||||| ||||||||||||||||    
T  32342880 aagtcacttgatgatgttgatattattcgaacattcactgcaaaaaggtctcaaaaaggtcatttacctcctaatt 32342955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 225
Target Start/End: Original strand, 32355367 - 32355442
Alignment:
Q  150 aagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggcatttacctcctaatt 225  Q
    ||||||||||||||||||||||| ||| |||||||||  ||||| |||||||  ||||| ||||||||||||||||    
T  32355367 aagtcacttgatgatgttgatattattcgaacattcactgcaaaaaggtctcaaaaaggtcatttacctcctaatt 32355442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 225
Target Start/End: Original strand, 32359486 - 32359561
Alignment:
Q  150 aagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggcatttacctcctaatt 225  Q
    ||||||||||||||||||||||| ||| |||||||||  |||||||||||||  ||| | ||||||||||||||||    
T  32359486 aagtcacttgatgatgttgatattattcgaacattcactgcaaagaggtctcaaaaatgtcatttacctcctaatt 32359561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 40146116 - 40146046
Alignment:
Q  155 acttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggcatttacctcctaatt 225  Q
    |||||||||||||||||| ||| |||||||||   ||||||||||||||||| ||||| ||||||||||||    
T  40146116 acttgatgatgttgatattattcgaacattcacaacaaagaggtctcggaaatggcatctacctcctaatt 40146046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 34228338 - 34228269
Alignment:
Q  152 gtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggcatttacctcct 221  Q
    ||||||||||||||||||||| ||| ||||||| | | ||||||||||| |||||  |||||||||||||    
T  34228338 gtcacttgatgatgttgatattattcgaacatttaccacaaagaggtcttggaaattgcatttacctcct 34228269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 2826407 - 2826349
Alignment:
Q  157 ttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggcattta 215  Q
    ||||| |||||||||| ||| ||||||||| ||||||||||| |||| | |||||||||    
T  2826407 ttgataatgttgatattattcgaacattcaccgcaaagaggtatcggcatgggcattta 2826349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 3055407 - 3055621
Alignment:
Q  19 gaagtacacaagttatcaagccatgtcaataagctagtaa-----tcttataagcccgtgagaaagaattatga---atatgatcaacgatgtgtggttc 110  Q
    |||||| || ||||||||||||||||||||||||||||||     ||||||||||||||||||||||||| | |   | |||||||||||||||||||||    
T  3055407 gaagtaaaccagttatcaagccatgtcaataagctagtaaaataatcttataagcccgtgagaaagaattgttaccaacatgatcaacgatgtgtggttc 3055506  T
Q  111 aatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||  ||||| ||||||||  ||| |||    
T  3055507 aatgacttgatgatatgttacatcgagcgggagatattcaagtcatttgatgatgttgatattattcgaacattccgcgcaatgaggtctcataaatggc 3055606  T
Q  211 atttacctcctaatt 225  Q
    |||||||||||||||    
T  3055607 atttacctcctaatt 3055621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 87 - 225
Target Start/End: Original strand, 1280379 - 1280517
Alignment:
Q  87 aatatgatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattca 186  Q
    |||| ||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  1280379 aataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacattca 1280478  T
Q  187 tcgcaaagaggtctcggaaagggcatttacctcctaatt 225  Q
     ||||||||||||||||||| ||||||||||||||||||    
T  1280479 ccgcaaagaggtctcggaaaaggcatttacctcctaatt 1280517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 111 - 225
Target Start/End: Original strand, 203875 - 203989
Alignment:
Q  111 aatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggc 210  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||| || |||||||||||||||||| |    
T  203875 aatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccggaaagaggtctcggaaaggac 203974  T
Q  211 atttacctcctaatt 225  Q
    |||||||||||||||    
T  203975 atttacctcctaatt 203989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 34 - 225
Target Start/End: Complemental strand, 23244805 - 23244606
Alignment:
Q  34 tcaagccatgtcaataagctagtaa-----tcttataagcccgtgagaaagaattatga---atatgatcaacgatgtgtggttcaatgacttgatgata 125  Q
    ||||||| |||||||||||||||||     |||||||||||  |||||||||||| | |   | | |||||||||||||| |||||||||||||||||||    
T  23244805 tcaagccctgtcaataagctagtaaaataatcttataagccaatgagaaagaattgttaccaacaagatcaacgatgtgtcgttcaatgacttgatgata 23244706  T
Q  126 tgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggcatttacctcctaatt 225  Q
    |||||  |||||||| || ||||| |||||||||||||||||||||| ||||||||||| | ||||| |||||||| |||||||||| ||||| ||||||    
T  23244705 tgttatgtcgagcggaagttattctagtcacttgatgatgttgatattatttgaacattaaccgcaacgaggtctcagaaagggcatgtacctgctaatt 23244606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 56 - 225
Target Start/End: Original strand, 11852682 - 11852854
Alignment:
Q  56 taatcttataagcccgtgagaaagaattatga---atatgatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaag 152  Q
    |||||||||||| ||||||||||||||||| |   | | ||| || |||||||||||||||||||||||||||||||||| ||| ||||||||||| ||     
T  11852682 taatcttataagtccgtgagaaagaattattaccaacaagatgaaagatgtgtggttcaatgacttgatgatatgttacaccgaacgggagatatttaac 11852781  T
Q  153 tcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggcatttacctcctaatt 225  Q
    |||||||||||||||||||| ||| ||||||| | | |||||||||||  ||||| | |||||||| ||||||    
T  11852782 tcacttgatgatgttgatattattcgaacatttaacacaaagaggtctaagaaagagtatttaccttctaatt 11852854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 92 - 225
Target Start/End: Original strand, 8785788 - 8785921
Alignment:
Q  92 gatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgca 191  Q
    |||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||| ||| |||||||| ||||||| ||| ||||||||| ||||    
T  8785788 gatcaacgatgtgtggttcaatgacttgataatatattacatcaagcgggagatattcaattcagttgatgatattgatattattcgaacattcaccgca 8785887  T
Q  192 aagaggtctcggaaagggcatttacctcctaatt 225  Q
    || |||||||| ||||||   |||||||||||||    
T  8785888 aataggtctcgaaaagggttcttacctcctaatt 8785921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 104 - 225
Target Start/End: Complemental strand, 26540812 - 26540691
Alignment:
Q  104 gtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcgg 203  Q
    |||||| ||||| |||||||||||||||| |||||||||||||||||| |||||||||||  ||||||| ||| ||||||||| ||||||||  |||| |    
T  26540812 gtggttaaatgatttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcgaacattcaccgcaaagaaatctcag 26540713  T
Q  204 aaagggcatttacctcctaatt 225  Q
    ||||||||||||||||||||||    
T  26540712 aaagggcatttacctcctaatt 26540691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 27169046 - 27168839
Alignment:
Q  18 ggaagtacacaagttatcaagccatgtcaataagctagtaa-----tcttataagcccgtgagaaagaattatga---atatgatcaacgatgtgtggtt 109  Q
    |||||| ||| |||||||||| | |||||||||||||||||     |||||||||||| ||||||| |||| | |   | | ||||||||||||||||||    
T  27169046 ggaagtccaccagttatcaagtcttgtcaataagctagtaaaataatcttataagcccatgagaaataattgttacaaacaagatcaacgatgtgtggtt 27168947  T
Q  110 caatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaaggg 209  Q
    |||| |        ||||||||| |||||||||||||||||||||||||||| |||||||||| ||| ||||||||| || || ||||||||  ||||||    
T  27168946 caataa--------tatgttacaccgagcgggagatattcaagtcacttgataatgttgatattattcgaacattcaccgaaatgaggtctcataaaggg 27168855  T
Q  210 catttacctcctaatt 225  Q
    ||||||||||||||||    
T  27168854 catttacctcctaatt 27168839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 105 - 225
Target Start/End: Original strand, 22541905 - 22542025
Alignment:
Q  105 tggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacatt-catcgcaaagaggtctcgg 203  Q
    ||||| |||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||| |||| ||| ||||||| | ||| ||||||||| |||    
T  22541905 tggttgaatgacttgatgatatgttacatcgaacggaagatattcaagtcactcgatgatgttaatattattcgaacattccctcg-aaagaggtcgcgg 22542003  T
Q  204 aaagggcatttacctcctaatt 225  Q
    |||||||||||||||| |||||    
T  22542004 aaagggcatttacctcataatt 22542025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 104 - 225
Target Start/End: Complemental strand, 22713048 - 22712935
Alignment:
Q  104 gtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcgg 203  Q
    ||||||||||||||||||||||||        |||||| |||||||| ||||||||||||||||||||| |||  |||||||| |||||||||||||| |    
T  22713048 gtggttcaatgacttgatgatatg--------agcgggggatattcatgtcacttgatgatgttgatattattcaaacattcaccgcaaagaggtctcag 22712957  T
Q  204 aaagggcatttacctcctaatt 225  Q
    |||| |||||||||||||||||    
T  22712956 aaagagcatttacctcctaatt 22712935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 135 - 225
Target Start/End: Original strand, 2228964 - 2229054
Alignment:
Q  135 gagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagagg-tctcggaaagggcatttacctcctaatt 225  Q
    |||||| ||||||| |||||| |||||||||||||||| |||||||||||||||||||||||| ||| || |||||||||||||||||||||    
T  2228964 gagcggaagatatttaagtcatttgatgatgttgatattatttgaacattcatcgcaaagaggttctagg-aagggcatttacctcctaatt 2229054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 225
Target Start/End: Complemental strand, 19519053 - 19518978
Alignment:
Q  150 aagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggcatttacctcctaatt 225  Q
    ||||||||||||||||||||||| ||| ||||||||| ||||||||||| | ||||||| |||||||| |||||||    
T  19519053 aagtcacttgatgatgttgatattattcgaacattcaccgcaaagaggtattggaaaggtcatttaccacctaatt 19518978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 31944540 - 31944755
Alignment:
Q  18 ggaagtacacaagttatcaagccatgtcaataagctagtaa-----tcttataagcccgtgagaaagaattatga---atatgatcaacgatgtgtggtt 109  Q
    |||||| ||| |||||||||||| || ||||||||||||||     |||||||||| |||||||||||||| | |   | | ||||||||||||||||||    
T  31944540 ggaagtccaccagttatcaagccctgccaataagctagtaaaataatcttataagctcgtgagaaagaattgttaccaacaagatcaacgatgtgtggtt 31944639  T
Q  110 caatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaaggg 209  Q
    ||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||    
T  31944640 caatgacttgatgatatgttacaccgagtgtgagatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagaggtctcggaaaggg 31944739  T
Q  210 catttacctcctaatt 225  Q
    ||||||||||||||||    
T  31944740 catttacctcctaatt 31944755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 90 - 225
Target Start/End: Complemental strand, 53693205 - 53693070
Alignment:
Q  90 atgatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcg 189  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| ||||||||||||    
T  53693205 atgatcaacggtgtgtggttcaatgacttgatgatatgttacatcgagcgggagataatcaaggcacttgatgatgttgatattattcgaacattcatcg 53693106  T
Q  190 caaagaggtctcggaaagggcatttacctcctaatt 225  Q
    |||||||||||||||||||||||| ||||| |||||    
T  53693105 caaagaggtctcggaaagggcattcacctcttaatt 53693070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 92 - 216
Target Start/End: Original strand, 27364889 - 27365013
Alignment:
Q  92 gatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgca 191  Q
    |||||||  ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||| || |    
T  27364889 gatcaacagtgtgtggttaaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccgaa 27364988  T
Q  192 aagaggtctcggaaagggcatttac 216  Q
    ||||||||||| |||||||||||||    
T  27364989 aagaggtctcgaaaagggcatttac 27365013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 12211395 - 12211262
Alignment:
Q  92 gatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgca 191  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||| |||||||||||||||| ||| ||||||||||  ||    
T  12211395 gatcaacgatgtgtggttcaatgacttgatgatatgttacaccgaacaggagatattcaagtcatttgatgatgttgatattattcgaacattcatttca 12211296  T
Q  192 aagaggtctcggaaagggcatttacctcctaatt 225  Q
    | ||||||||| ||| | ||||||||||||||||    
T  12211295 atgaggtctcgaaaatgacatttacctcctaatt 12211262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 92 - 225
Target Start/End: Original strand, 4325418 - 4325550
Alignment:
Q  92 gatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgca 191  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||  ||||||||||||||||||| |||||||||||||  |||    
T  4325418 gatcaacgatgtgtggttcaatgacttgatgatatgttacaccgagtgggagataatcaacccacttgatgatgttgatattatttgaacattcacagca 4325517  T
Q  192 aagaggtctcggaaagggcatttacctcctaatt 225  Q
     | | ||||| ||||||||| |||||||||||||    
T  4325518 ga-atgtctcagaaagggcaattacctcctaatt 4325550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 131 - 225
Target Start/End: Original strand, 3074414 - 3074508
Alignment:
Q  131 catcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggcatttacctcctaatt 225  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||| |||||||||    
T  3074414 catcgagcgggagataatcaagtcacttgatgatgttgatattatttgaacattcatcgcaaagaggtctcaggaagggcatttatctcctaatt 3074508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 92 - 186
Target Start/End: Complemental strand, 55464829 - 55464735
Alignment:
Q  92 gatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattca 186  Q
    ||||||| |||||||||| |||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||| ||| |||||||||    
T  55464829 gatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagaaaatcaagtcacttgatgatgttgatattattcgaacattca 55464735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 92 - 225
Target Start/End: Original strand, 42843713 - 42843849
Alignment:
Q  92 gatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgca 191  Q
    ||||||| |||||||||| ||||| |||||||||||||| || ||| | |||||||||||||||||||||||||||||||| | | ||||||||| | ||    
T  42843713 gatcaacaatgtgtggtttaatgagttgatgatatgttatattgagtgagagatattcaagtcacttgatgatgttgatattaatcgaacattcaccaca 42843812  T
Q  192 aa---gaggtctcggaaagggcatttacctcctaatt 225  Q
    ||   ||||||||||  |||||||| || ||||||||    
T  42843813 aagaggaggtctcggggagggcattgacatcctaatt 42843849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 225
Target Start/End: Complemental strand, 8898037 - 8897962
Alignment:
Q  150 aagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggcatttacctcctaatt 225  Q
    |||||||| |||||||||||||| ||| || |||||| |||||||||||||| |||||   |||||||||||||||    
T  8898037 aagtcactggatgatgttgatattattcgagcattcaccgcaaagaggtctcagaaagactatttacctcctaatt 8897962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 1147591 - 1147638
Alignment:
Q  178 gaacattcatcgcaaagaggtctcggaaagggcatttacctcctaatt 225  Q
    |||||||||| ||||||||||||||||||| | |||||||||||||||    
T  1147591 gaacattcattgcaaagaggtctcggaaagagtatttacctcctaatt 1147638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 1147523 - 1147581
Alignment:
Q  97 acgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtca 155  Q
    ||||||| ||||| ||||| ||||||||| ||||||||||| || ||||||||||||||    
T  1147523 acgatgtttggtttaatgatttgatgataggttacatcgagtggaagatattcaagtca 1147581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 225
Target Start/End: Complemental strand, 10632757 - 10632680
Alignment:
Q  150 aagtcacttgatgatgttgatataatttgaacatt--catcgcaaagaggtctcggaaagggcatttacctcctaatt 225  Q
    |||||||||||||||||| || | ||| |||||||  || |||||||| ||||||||||   ||||||||||||||||    
T  10632757 aagtcacttgatgatgttaatgttattcgaacattttcaccgcaaagaagtctcggaaatatcatttacctcctaatt 10632680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 8e-61; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 29 - 225
Target Start/End: Original strand, 9230336 - 9230540
Alignment:
Q  29 agttatcaagccatgtcaataagctagtaa-----tcttataagcccgtgagaaagaattatga---atatgatcaacgatgtgtggttcaatgacttga 120  Q
    ||||||||||||||||||||||||||||||     |||||||||||||| ||||| |||| | |   | ||| |||||||||||||||||||||||||||    
T  9230336 agttatcaagccatgtcaataagctagtaaaataatcttataagcccgttagaaaaaattgttaccaacatggtcaacgatgtgtggttcaatgacttga 9230435  T
Q  121 tgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggcatttacctcc 220  Q
    ||||||||||||| |||||||||||| |||||||| |||||||||||||||| ||| ||||||||||||||||||||| ||| |||||||||||||||||    
T  9230436 tgatatgttacatagagcgggagatactcaagtcatttgatgatgttgatattattcgaacattcatcgcaaagaggtatcgaaaagggcatttacctcc 9230535  T
Q  221 taatt 225  Q
    |||||    
T  9230536 taatt 9230540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 100 - 225
Target Start/End: Complemental strand, 26493875 - 26493750
Alignment:
Q  100 atgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtc 199  Q
    |||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||| || |||||||||    
T  26493875 atgtgtggttaaatgacttgatgatacgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccgtaaagaggtc 26493776  T
Q  200 tcggaaagggcatttacctcctaatt 225  Q
    ||||||||||||||||||||||||||    
T  26493775 tcggaaagggcatttacctcctaatt 26493750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 43727920 - 43728103
Alignment:
Q  18 ggaagtacacaagttatcaagccatgtcaataagctagtaa-----tcttataagcccgtgagaaagaattatga---atatgatcaacgatgtgtggtt 109  Q
    |||||||||| |||||||||  |||||||||||||||||||     |||||||||||  |||||||||||| | |   | ||||||||||||||||||||    
T  43727920 ggaagtacaccagttatcaactcatgtcaataagctagtaaaataatcttataagcctatgagaaagaattgttaccaacatgatcaacgatgtgtggtt 43728019  T
Q  110 caatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaa 193  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||| |||  |||||||||||||||    
T  43728020 caatgacttgatgatatgttatatcgaacgggagatattcaagtcagttgatgatgttgatattattcaaacattcatcgcaaa 43728103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 27387475 - 27387342
Alignment:
Q  92 gatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattca-tcgc 190  Q
    ||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||     
T  27387475 gatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcactcg- 27387377  T
Q  191 aaagaggtctcggaaagggcatttacctcctaatt 225  Q
    ||||||||| ||||||| |||||||||||||||||    
T  27387376 aaagaggtcgcggaaagagcatttacctcctaatt 27387342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 92 - 225
Target Start/End: Original strand, 19399984 - 19400117
Alignment:
Q  92 gatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattca-tcgc 190  Q
    ||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||| ||||||||| |||     
T  19399984 gatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagatattcaagtcgcttgatgatgttgatattattcgaacattcactcg- 19400082  T
Q  191 aaagaggtctcggaaagggcatttacctcctaatt 225  Q
    ||||||||| ||||||||| |||||||||||||||    
T  19400083 aaagaggtcgcggaaagggtatttacctcctaatt 19400117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 56 - 225
Target Start/End: Complemental strand, 23180093 - 23179922
Alignment:
Q  56 taatcttataagcccgtgagaaagaattatga---atatgatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaag 152  Q
    ||||||||||||| ||||||||| |||| | |   | | ||||||||||||||| |||||| |||||||||||||||||| |||||| ||||||||||||    
T  23180093 taatcttataagctcgtgagaaataattgttaccaacaagatcaacgatgtgtgtttcaataacttgatgatatgttacaccgagcgagagatattcaag 23179994  T
Q  153 tcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggcatttacctcctaatt 225  Q
     |||||||| |||||||||| ||| ||||||||| ||||||||||||| |||||||||||||| |||||||||    
T  23179993 gcacttgataatgttgatattattcgaacattcaccgcaaagaggtcttggaaagggcattta-ctcctaatt 23179922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 92 - 225
Target Start/End: Original strand, 45197650 - 45197782
Alignment:
Q  92 gatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgca 191  Q
    ||||||| ||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||| |||||||||||  || ||||||||| | ||    
T  45197650 gatcaacaatgtgtggttcaatgacttgatgatatatt-catcgagcaggagatattcaagtcacttgacgatgttgatattgttcgaacattcaccaca 45197748  T
Q  192 aagaggtctcggaaagggcatttacctcctaatt 225  Q
    ||||||||||||  ||||||||||| ||||||||    
T  45197749 aagaggtctcggggagggcatttacatcctaatt 45197782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 96 - 228
Target Start/End: Original strand, 18375416 - 18375546
Alignment:
Q  96 aacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaaga 195  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||| ||| |||||||||| ||| |||||||||| || || |    
T  18375416 aacgatgtgtggttcaatgacttgatgatatattacatggagcgggagatattcaaatcactagataatgttgatattattcgaacattcat-gcgaa-a 18375513  T
Q  196 ggtctcggaaagggcatttacctcctaattcga 228  Q
    ||||||| ||||||||||||| |||||||||||    
T  18375514 ggtctcgaaaagggcatttacttcctaattcga 18375546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 93 - 225
Target Start/End: Complemental strand, 38575457 - 38575325
Alignment:
Q  93 atcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattca-tcgca 191  Q
    |||||| ||| |||||| || ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||| ||||||||| ||| |    
T  38575457 atcaacaatgggtggttgaacgacttgatgatatgttacaccgagcgggagatattaaagtcacttgatgatgttgatattattcgaacattcactcg-a 38575359  T
Q  192 aagaggtctcggaaagggcatttacctcctaatt 225  Q
    |||||||| |||||||  ||||||||||||||||    
T  38575358 aagaggtcgcggaaagaacatttacctcctaatt 38575325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 92 - 225
Target Start/End: Original strand, 8638620 - 8638754
Alignment:
Q  92 gatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgca 191  Q
    ||||||||| |||||||| ||| |||||||||||||||| | ||| |  ||||||||||||||| |||||||| | ||||| ||| ||||||||| ||||    
T  8638620 gatcaacgacgtgtggtttaattacttgatgatatgttataccgaacaagagatattcaagtcatttgatgatatcgatattattcgaacattcaacgca 8638719  T
Q  192 aaga-ggtctcggaaagggcatttacctcctaatt 225  Q
    |||| ||||||||||||||||||||||||||||||    
T  8638720 aagagggtctcggaaagggcatttacctcctaatt 8638754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 14088815 - 14088887
Alignment:
Q  153 tcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggcatttacctcctaatt 225  Q
    ||||||||||||| |||||| |||  ||||| |||||||||||||||||||||| ||||||||||||||||||    
T  14088815 tcacttgatgatgctgatattattcaaacatccatcgcaaagaggtctcggaaaaggcatttacctcctaatt 14088887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 14398833 - 14398905
Alignment:
Q  153 tcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggcatttacctcctaatt 225  Q
    ||||||||||||| |||||| |||  ||||| |||||||||||||||||||||| ||||||||||||||||||    
T  14398833 tcacttgatgatgctgatattattcaaacatccatcgcaaagaggtctcggaaaaggcatttacctcctaatt 14398905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 25024596 - 25024662
Alignment:
Q  159 gatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggcatttacctcctaatt 225  Q
    |||||||||||||   || | ||||||| | |||||||||||| |||||||||||||||||||||||    
T  25024596 gatgatgttgataagtttcggacattcaccacaaagaggtctcagaaagggcatttacctcctaatt 25024662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 23804667 - 23804627
Alignment:
Q  92 gatcaacgatgtgtggttcaatgacttgatgatatgttaca 132  Q
    |||||||||||||||||||||||||||| |||||| |||||    
T  23804667 gatcaacgatgtgtggttcaatgacttgttgatatattaca 23804627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 25491742 - 25491674
Alignment:
Q  153 tcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggcatttacctcct 221  Q
    |||||||||||||||||||| ||| |||||||||  | |||||||||||  ||| ||||||||| ||||    
T  25491742 tcacttgatgatgttgatattattcgaacattcactgtaaagaggtctcaaaaaaggcatttacttcct 25491674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 9557784 - 9557827
Alignment:
Q  182 attcatcgcaaagaggtctcggaaagggcatttacctcctaatt 225  Q
    ||||| |||||||||||||| ||||||| |||||||||||||||    
T  9557784 attcaccgcaaagaggtctctgaaaggggatttacctcctaatt 9557827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 14498822 - 14499036
Alignment:
Q  18 ggaagtacacaagttatcaagccatgtcaataagctagtaa-----tcttataagcccgtgagaaagaattatga---atatgatcaacgatgtgtggtt 109  Q
    |||||||||| ||| ||||||||||||||||||||||||||     |||||||||| ||||||||||| || | |   | |||||||||||| ||||||     
T  14498822 ggaagtacaccagtcatcaagccatgtcaataagctagtaaaataatcttataagctcgtgagaaagatttgttaccaacatgatcaacgatttgtggt- 14498920  T
Q  110 caatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaaggg 209  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||| ||||||     
T  14498921 caatgacttgatgatatcttacatcgagcgggagatattcaagtcatttgatgatgttgatattattcgaacattcatcgcaaagaggtctcagaaagga 14499020  T
Q  210 catttacctcctaatt 225  Q
    ||||||||||||||||    
T  14499021 catttacctcctaatt 14499036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 56 - 225
Target Start/End: Complemental strand, 52754025 - 52753856
Alignment:
Q  56 taatcttataagcccgtgagaaagaattatga---atatgatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaag 152  Q
    |||||||||||||| ||||||||||||||| |   | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  52754025 taatcttataagcctgtgagaaagaattattaccaacatgatcaacgatgtgtggttcaatgacttgatgatatgttacatcgaacgggagatattcaag 52753926  T
Q  153 tcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggcatttacctcctaatt 225  Q
    ||| |||||||||||||||| ||| ||||||   ||||||||||||||||||||||| |||||||||||||||    
T  52753925 tcatttgatgatgttgatattattcgaacat---tcgcaaagaggtctcggaaagggtatttacctcctaatt 52753856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 92 - 225
Target Start/End: Original strand, 9637127 - 9637260
Alignment:
Q  92 gatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgca 191  Q
    |||||| |||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  9637127 gatcaatgatgcgtggttcaatgacttgatgatatgttacaccgagcgggtgatattcaagtcacttgatgatgttgatattatttgaacattcaccgca 9637226  T
Q  192 aagaggtctcggaaagggcatttacctcctaatt 225  Q
    ||||||||||||||||||||||||| ||||||||    
T  9637227 aagaggtctcggaaagggcatttacatcctaatt 9637260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 92 - 225
Target Start/End: Original strand, 25017392 - 25017525
Alignment:
Q  92 gatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgca 191  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||| |||||||||||||||||||| ||| |||| |||| ||||    
T  25017392 gatcaacgatgtgtggttcaatgacttgatgatatcttacaccgagcgagagatattcaaatcacttgatgatgttgatattattcgaacgttcaccgca 25017491  T
Q  192 aagaggtctcggaaagggcatttacctcctaatt 225  Q
    |||||||||| |||||||||| ||||||||||||    
T  25017492 aagaggtctcagaaagggcatatacctcctaatt 25017525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 93 - 225
Target Start/End: Complemental strand, 26273097 - 26272965
Alignment:
Q  93 atcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaa 192  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||| |||| ||| |||||||||||||||    
T  26273097 atcaacgatgtgttgttcaatgatttgatgatatgttacatcgagcaggagatattcaagtcacgtgatgatgttaatattattcgaacattcatcgcaa 26272998  T
Q  193 agaggtctcggaaagggcatttacctcctaatt 225  Q
    | ||||||||||||||||| |||||| ||||||    
T  26272997 acaggtctcggaaagggcaattacctactaatt 26272965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 48606781 - 48606648
Alignment:
Q  92 gatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgca 191  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||| |||  |||| ||| ||||    
T  48606781 gatcaacgatgtgtggttcaatgacttgatgatatgttacaccgagcgggagatattcaagtaacttgataatgttgatattattcaaacactcaccgca 48606682  T
Q  192 aagaggtctcggaaagggcatttacctcctaatt 225  Q
    |||||||||  ||||||||||||||||| |||||    
T  48606681 aagaggtcttcgaaagggcatttacctcataatt 48606648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 111 - 225
Target Start/End: Complemental strand, 35949128 - 35949014
Alignment:
Q  111 aatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggc 210  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||| ||||||||| || |||||||||||||||||| |    
T  35949128 aatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatgttattcgaacattcaccgaaaagaggtctcggaaaggac 35949029  T
Q  211 atttacctcctaatt 225  Q
    |||||||||||||||    
T  35949028 atttacctcctaatt 35949014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 40864888 - 40864755
Alignment:
Q  92 gatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgca 191  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||| || | ||||||||||||||||||| |||||||||| ||| ||||||||| ||||    
T  40864888 gatcaacgatgtgtggttcaatgacttgatgatatcttacaccgaacgagggatattcaagtcacttgataatgttgatattattcgaacattcaccgca 40864789  T
Q  192 aagaggtctcggaaagggcatttacctcctaatt 225  Q
    ||||||| |  |||||||||||||||||||||||    
T  40864788 aagaggttttagaaagggcatttacctcctaatt 40864755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 42 - 225
Target Start/End: Complemental strand, 30559232 - 30559041
Alignment:
Q  42 tgtcaataagctagtaa-----tcttataagcccgtgagaaagaatt---atgaatatgatcaacgatgtgtggttcaatgacttgatgatatgttacat 133  Q
    |||||||||||||||||     |||||||||| || |||||||||||   || || | ||||||||||||||||||| |||||||||||||||||||||     
T  30559232 tgtcaataagctagtaaaatattcttataagctcgcgagaaagaattgttatcaacaagatcaacgatgtgtggttctatgacttgatgatatgttacac 30559133  T
Q  134 cgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggcatttacctcctaatt 225  Q
    |||||| ||||||||||||||||||||||||| |||||| ||| ||||||||| || ||| || ||||  ||| |  |||||||||||||||    
T  30559132 cgagcgagagatattcaagtcacttgatgatgctgatattattcgaacattcaccgtaaatagatctcataaatgatatttacctcctaatt 30559041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 104 - 225
Target Start/End: Complemental strand, 21973945 - 21973824
Alignment:
Q  104 gtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcgg 203  Q
    |||||| ||||| ||||||||||||||||  ||||||||||||||||| |||||||||||  ||||||| ||| ||||||||| ||||||||  ||||||    
T  21973945 gtggttaaatgatttgatgatatgttacactgagcgggagatattcaaatcacttgatgacattgatattattcgaacattcaccgcaaagaaatctcgg 21973846  T
Q  204 aaagggcatttacctcctaatt 225  Q
    ||||||||||||||||||||||    
T  21973845 aaagggcatttacctcctaatt 21973824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 92 - 186
Target Start/End: Original strand, 17127445 - 17127539
Alignment:
Q  92 gatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattca 186  Q
    ||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||| |||||||||    
T  17127445 gatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagatattcaagtcgcttgatgatgttgatattattcgaacattca 17127539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 32380021 - 32379892
Alignment:
Q  92 gatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgca 191  Q
    ||||||||||||||||||||||||||||||   |||||||| | | |||||||||||||| |||||||||||||||||||| ||| ||||||| | ||||    
T  32380021 gatcaacgatgtgtggttcaatgacttgat---atgttacaccaaacgggagatattcaattcacttgatgatgttgatattattcgaacattta-cgca 32379926  T
Q  192 aagaggtctcggaaagggcatttacctcctaatt 225  Q
    ||||||| ||| ||| | ||||||||||||||||    
T  32379925 aagaggtatcgaaaatgacatttacctcctaatt 32379892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 112 - 225
Target Start/End: Original strand, 30054847 - 30054960
Alignment:
Q  112 atgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggca 211  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||| || |||| || ||| |||| |||  ||||||||||| ||  ||| | ||    
T  30054847 atgacttaatgatatgttacaccgagcgggagatattcaagtcacttgatcatattgacattattcgaaccttctccgcaaagaggtatcataaatgaca 30054946  T
Q  212 tttacctcctaatt 225  Q
    ||||||||||||||    
T  30054947 tttacctcctaatt 30054960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 17874845 - 17874917
Alignment:
Q  153 tcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggcatttacctcctaatt 225  Q
    ||||| |||||||||||||| |||  |||||||| ||||||||||||||| ||||  ||||||||| ||||||    
T  17874845 tcactggatgatgttgatattattcaaacattcaccgcaaagaggtctcgaaaagatcatttaccttctaatt 17874917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 28463197 - 28463234
Alignment:
Q  188 cgcaaagaggtctcggaaagggcatttacctcctaatt 225  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  28463197 cgcaaagaggtcttggaaagggcattcacctcctaatt 28463234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 14499037 - 14499073
Alignment:
Q  248 atattcaaatcactattgacaagttatgtttcatctc 284  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  14499037 atatttaaaacactattgacaagttatgtttcatctc 14499073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 100 - 225
Target Start/End: Complemental strand, 135015 - 134890
Alignment:
Q  100 atgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtc 199  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||| || |||||||||    
T  135015 atgtgtggttaaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccggaaagaggtc 134916  T
Q  200 tcggaaagggcatttacctcctaatt 225  Q
    ||||||||||||||||||||||||||    
T  134915 tcggaaagggcatttacctcctaatt 134890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 7e-49; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 29 - 225
Target Start/End: Complemental strand, 12180765 - 12180561
Alignment:
Q  29 agttatcaagccatgtcaataagctagtaa-----tcttataagcccgtgagaaagaattatga---atatgatcaacgatgtgtggttcaatgacttga 120  Q
    |||||||||||| |||||||||||| ||||     |||||||||||||||||||| |||| | |   | | |||||||  ||||||||||||||||||||    
T  12180765 agttatcaagccctgtcaataagctggtaaaataatcttataagcccgtgagaaaaaattgttaccaacaagatcaacattgtgtggttcaatgacttga 12180666  T
Q  121 tgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggcatttacctcc 220  Q
    |||||||||||| |||| |||||| ||||||||||||||||| ||||||||| ||| ||||||||| |||||||||||||||| |||||||||||||| |    
T  12180665 tgatatgttacaccgagtgggagaaattcaagtcacttgatgttgttgatattattcgaacattcaccgcaaagaggtctcgggaagggcatttaccttc 12180566  T
Q  221 taatt 225  Q
    |||||    
T  12180565 taatt 12180561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 87 - 225
Target Start/End: Original strand, 11970961 - 11971098
Alignment:
Q  87 aatatgatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattca 186  Q
    |||| |||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||  |  |||||||||    
T  11970961 aataagatcaacgatgtgtggttcaatgacttgatcatatgttacaccgagcggaagatattcaagtcacttgatgatgttgatattttgcgaacattca 11971060  T
Q  187 tcgcaaagaggtctcggaaagggcatttacctcctaatt 225  Q
     || ||||||||||| |||||||||||||||||||||||    
T  11971061 ccg-aaagaggtctcagaaagggcatttacctcctaatt 11971098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 93 - 225
Target Start/End: Original strand, 25599159 - 25599294
Alignment:
Q  93 atcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacat---tcatcg 189  Q
    |||||||| ||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| ||| ||||||   ||||||    
T  25599159 atcaacgacgtgcggttcaatgacttgatggtatgttacatcgagtgggagataatcaagtcacttgatgatgttgatattattcgaacattcatcatcg 25599258  T
Q  190 caaagaggtctcggaaagggcatttacctcctaatt 225  Q
    ||||||||||||||||||||||||||| ||||||||    
T  25599259 caaagaggtctcggaaagggcatttacgtcctaatt 25599294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 90 - 225
Target Start/End: Complemental strand, 32442142 - 32442010
Alignment:
Q  90 atgatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcg 189  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||| | |  |||||||||||||||||||| ||| |||||||||||     
T  32442142 atgattaacgatgtgtggttcaatgactt-atgatatgttacatcgagcggaagataataa--tcacttgatgatgttgatattattcgaacattcatcc 32442046  T
Q  190 caaagaggtctcggaaagggcatttacctcctaatt 225  Q
    ||||||||| |||||||||||||||||||| |||||    
T  32442045 caaagaggtatcggaaagggcatttacctcttaatt 32442010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 92 - 225
Target Start/End: Original strand, 24074418 - 24074551
Alignment:
Q  92 gatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattc-atcgc 190  Q
    ||||||| |||||||||  |||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||| ||| |||||||| | ||     
T  24074418 gatcaacaatgtgtggtaaaatgacttgatgatatgttacaccgagggggagatattcaagttacttgatgatgttgatattattcgaacattcaaccgg 24074517  T
Q  191 aaagaggtctcggaaagggcatttacctcctaatt 225  Q
    ||||||||||||| || | ||||||||||||||||    
T  24074518 aaagaggtctcgg-aatgacatttacctcctaatt 24074551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 125 - 225
Target Start/End: Original strand, 3050902 - 3051002
Alignment:
Q  125 atgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggcatttacctcctaat 224  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||  |||||||| || ||||||||||||||||| ||||||||| ||||||    
T  3050902 atgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcaaacattcaccggaaagaggtctcggaaagagcatttaccacctaat 3051001  T
Q  225 t 225  Q
    |    
T  3051002 t 3051002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 92 - 225
Target Start/End: Original strand, 25340451 - 25340584
Alignment:
Q  92 gatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgca 191  Q
    |||||| |||||||| || | ||| |||||||||||||||| | || || ||||||| ||||||||||||||||||||||| ||| ||||||||| |  |    
T  25340451 gatcaatgatgtgtgattaagtgatttgatgatatgttacacccagtggaagatatttaagtcacttgatgatgttgatattattcgaacattcaccata 25340550  T
Q  192 aagaggtctcggaaagggcatttacctcctaatt 225  Q
    |||||||||| ||||| |||||||||||||||||    
T  25340551 aagaggtctcagaaagtgcatttacctcctaatt 25340584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 30621226 - 30621311
Alignment:
Q  139 gggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggcatttacctcctaatt 225  Q
    |||||||| ||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  30621226 gggagataatcaagtcacttgatgatgttgatattattcgaacattcatcg-aaagaggtctcggaaaggacatttacctcctaatt 30621311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 1296557 - 1296644
Alignment:
Q  134 cgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggcatttacctcct 221  Q
    ||||||||||||||||||||||||||||||| || |||| |||  || |||||    |||||||||||||||||| ||||||||||||    
T  1296557 cgagcgggagatattcaagtcacttgatgatattaatattattcaaatattcacaataaagaggtctcggaaaggccatttacctcct 1296644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 92 - 225
Target Start/End: Original strand, 17746 - 17879
Alignment:
Q  92 gatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgca 191  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||| ||| ||||||||| ||||    
T  17746 gatcaacgatgtgtggttcaatgacttgatgatacgttacatcgagcgggagatatttaagtcacttgctgatgttgatattattcgaacattcaccgca 17845  T
Q  192 aagaggtctcggaaagggcatttacctcctaatt 225  Q
    |||||||||| |||||| |||||| |||||||||    
T  17846 aagaggtctccgaaaggacatttaactcctaatt 17879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 92 - 225
Target Start/End: Original strand, 31989035 - 31989168
Alignment:
Q  92 gatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattca-tcgc 190  Q
    ||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||     
T  31989035 gatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcactcg- 31989133  T
Q  191 aaagaggtctcggaaagggcatttacctcctaatt 225  Q
    ||||||||| |||||||||||||||||||||||||    
T  31989134 aaagaggtcgcggaaagggcatttacctcctaatt 31989168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 3857127 - 3856912
Alignment:
Q  18 ggaagtacacaagttatcaagccatgtcaataagctagtaa-----tcttataagcccgtgagaaagaattatgaatat---gatcaacgatgtgtggtt 109  Q
    |||||| ||| |||||||||||| |||||||||||||||||     |||||||||||||||||||| |||| | |  ||   ||||||||||||||||||    
T  3857127 ggaagtccaccagttatcaagccctgtcaataagctagtaaaataatcttataagcccgtgagaaataattgttaccatcaagatcaacgatgtgtggtt 3857028  T
Q  110 caatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaaggg 209  Q
     ||||||||||||| |||||||   ||| ||||||||||||||||| |||||||||||||||| |||  |||||||| |||||||||||||| |||||      
T  3857027 aaatgacttgatgacatgttactcagagtgggagatattcaagtcatttgatgatgttgatattattcaaacattcaccgcaaagaggtctcagaaagaa 3856928  T
Q  210 catttacctcctaatt 225  Q
     |||||||||||||||    
T  3856927 aatttacctcctaatt 3856912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 92 - 225
Target Start/End: Original strand, 43137133 - 43137265
Alignment:
Q  92 gatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgca 191  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||  |||     
T  43137133 gatcaacgatgtatggttcaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcgccgc- 43137231  T
Q  192 aagaggtctcggaaagggcatttacctcctaatt 225  Q
    |||||||||| |||| || |||||||||||||||    
T  43137232 aagaggtctcagaaaaggtatttacctcctaatt 43137265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 15667897 - 15668111
Alignment:
Q  18 ggaagtacacaagttatcaagccatgtcaataagctagtaa-----tcttataagcccgtgagaaagaattatga---atatgatcaacgatgtgtggtt 109  Q
    |||||| ||| |||||||||||| | ||||||||| |||||     |||||||| ||| |||||||||||| | |   | | |||||| |||||||||||    
T  15667897 ggaagtccactagttatcaagccctatcaataagcaagtaaaataatcttataaacccatgagaaagaattgttaccaacaagatcaaggatgtgtggtt 15667996  T
Q  110 caatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaaggg 209  Q
    |||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||| |||||| ||   ||||||||| ||||||| ||    
T  15667997 caataacttgatgatatgttataccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacatgcacaacaaagaggtatcggaaaagg 15668096  T
Q  210 catttacctcctaat 224  Q
    |||||||||||||||    
T  15668097 catttacctcctaat 15668111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 92 - 225
Target Start/End: Original strand, 53710404 - 53710537
Alignment:
Q  92 gatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattca-tcgc 190  Q
    ||||||| |||  ||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||     
T  53710404 gatcaacaatggatggttgaatgacttgatgatctgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcactcg- 53710502  T
Q  191 aaagaggtctcggaaagggcatttacctcctaatt 225  Q
    ||||||||| |||||||||||||||||||||||||    
T  53710503 aaagaggtcacggaaagggcatttacctcctaatt 53710537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 92 - 225
Target Start/End: Original strand, 51261985 - 51262118
Alignment:
Q  92 gatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgca 191  Q
    ||||||||| ||||||| |||||| ||||||||||||||||   ||||| ||||||||||||||||||||||||||||||| ||| |||||||||||| |    
T  51261985 gatcaacgaagtgtggtacaatgaattgatgatatgttacactaagcggaagatattcaagtcacttgatgatgttgatattattcgaacattcatcgta 51262084  T
Q  192 aagaggtctcggaaagggcatttacctcctaatt 225  Q
    ||||||||| | ||||  ||||||||||||||||    
T  51262085 aagaggtcttgaaaagaacatttacctcctaatt 51262118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 24908562 - 24908429
Alignment:
Q  92 gatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattca-tcgc 190  Q
    ||||||| |||||||||| |||||||||||||||||||||| | ||| ||||||||||||||| ||||| ||||||||||| ||| ||||||||| |||     
T  24908562 gatcaacaatgtgtggttgaatgacttgatgatatgttacaccaagcaggagatattcaagtcgcttgaagatgttgatattattcgaacattcactcg- 24908464  T
Q  191 aaagaggtctcggaaagggcatttacctcctaatt 225  Q
    ||||||||| ||||||||| |||||||||||||||    
T  24908463 aaagaggtcgcggaaagggtatttacctcctaatt 24908429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 37382038 - 37381905
Alignment:
Q  92 gatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgca 191  Q
    |||||||||||||||||| ||||||| |||||||| |||||  ||||  ||||||||||||||| ||||||||||| |||| ||| |||||||||  |||    
T  37382038 gatcaacgatgtgtggttaaatgactcgatgatatattacactgagcatgagatattcaagtcatttgatgatgtttatattattcgaacattcactgca 37381939  T
Q  192 aagaggtctcggaaagggcatttacctcctaatt 225  Q
    ||||||||||||||| | ||||| ||||||||||    
T  37381938 aagaggtctcggaaatgacatttgcctcctaatt 37381905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 150 - 225
Target Start/End: Complemental strand, 22934910 - 22934835
Alignment:
Q  150 aagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggcatttacctcctaatt 225  Q
    ||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||||||||| |||||    
T  22934910 aagtcacttgatgatgttgatattattagaacattcaccgcaaagaggtctcggaaaggtcatttacctcttaatt 22934835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 24988917 - 24988849
Alignment:
Q  157 ttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggcatttacctcctaatt 225  Q
    |||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||| || |||||||||    
T  24988917 ttgatgatgttgatattattcgaacattcaccgcaaagaggtctcggaaagggcatgtatctcctaatt 24988849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 43585836 - 43585903
Alignment:
Q  105 tggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatat 172  Q
    ||||| |||||||||||||||||||||| |||||||||||||| ||||| |||||| |||||| ||||    
T  43585836 tggttgaatgacttgatgatatgttacaccgagcgggagatatccaagttacttgacgatgttaatat 43585903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 38282510 - 38282546
Alignment:
Q  189 gcaaagaggtctcggaaagggcatttacctcctaatt 225  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  38282510 gcaaagaggtctcggaaagagcatttacctcataatt 38282546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 92 - 225
Target Start/End: Original strand, 259924 - 260057
Alignment:
Q  92 gatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgca 191  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||| ||| ||||||||| ||||    
T  259924 gatcaacaatgagtggttcaatgacttgatgatatgttacatcgagcgggatatattcaagtcacttgatgacattgatattattcgaacattcaccgca 260023  T
Q  192 aagaggtctcggaaagggcatttacctcctaatt 225  Q
    ||||||||||||||| |||||||||| |||||||    
T  260024 aagaggtctcggaaatggcatttaccacctaatt 260057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 6e-46; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 12539498 - 12539712
Alignment:
Q  18 ggaagtacacaagttatcaagccatgtcaataagctagtaa-----tcttataagcccgtgagaaagaattatga---atatgatcaacgatgtgtggtt 109  Q
    |||||| ||| |||||||||||| || ||||||||||||||     ||||||||||||||||||||||||| | |   | | ||||||| ||| ||||||    
T  12539498 ggaagtccaccagttatcaagccttgccaataagctagtaaaagaatcttataagcccgtgagaaagaattgttaccaacaagatcaacaatgcgtggtt 12539597  T
Q  110 caatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaaggg 209  Q
    ||||||||||||||||||||| | |||||   ||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||| ||||||      
T  12539598 caatgacttgatgatatgtta-accgagcataagatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagaggtcttggaaagaa 12539696  T
Q  210 catttacctcctaatt 225  Q
    ||||||||||||||||    
T  12539697 catttacctcctaatt 12539712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 96 - 225
Target Start/End: Complemental strand, 19951996 - 19951867
Alignment:
Q  96 aacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaaga 195  Q
    |||||||| |||||||||||||||| ||||||| |||  ||||| |||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||    
T  19951996 aacgatgtatggttcaatgacttgacgatatgtcacactgagcgagagatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaaga 19951897  T
Q  196 ggtctcggaaagggcatttacctcctaatt 225  Q
    ||||||| ||||||||||||||| ||||||    
T  19951896 ggtctcgaaaagggcatttaccttctaatt 19951867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 35649829 - 35649696
Alignment:
Q  92 gatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgca 191  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||  ||||||||  |||    
T  35649829 gatcaacgatgtgttgttcaatgacttgatgatatgttacaccgagcgggagatattcaagtcatttgatgatgttgatattattgaaacattcactgca 35649730  T
Q  192 aagaggtctcggaaagggcatttacctcctaatt 225  Q
    ||||| ||||| ||||| ||||||| ||||||||    
T  35649729 aagagatctcgaaaaggacatttacttcctaatt 35649696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 105 - 225
Target Start/End: Original strand, 22483568 - 22483688
Alignment:
Q  105 tggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcgga 204  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||  ||||||| ||| ||||||||| ||||||||  |||||||    
T  22483568 tggttaaatgacttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcgaacattcaccgcaaagaaatctcgga 22483667  T
Q  205 aagggcatttacctcctaatt 225  Q
    |||||||||||||||||||||    
T  22483668 aagggcatttacctcctaatt 22483688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 33453357 - 33453224
Alignment:
Q  92 gatcaacgatgtgtggttcaatgacttgatgatatgtt-acatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgc 190  Q
    ||||||||||||||||| ||||||||| || ||||||| ||| ||||||||||||||| ||||||||||||||||||||||| ||| ||||||||| |||    
T  33453357 gatcaacgatgtgtggt-caatgacttcatcatatgtttacaccgagcgggagatatttaagtcacttgatgatgttgatattattcgaacattcaccgc 33453259  T
Q  191 aaagaggtctcggaaagggcatttacctcctaatt 225  Q
    |||||||| || ||||| |||||||||||||||||    
T  33453258 aaagaggtatcagaaagagcatttacctcctaatt 33453224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 104 - 225
Target Start/End: Original strand, 34526370 - 34526491
Alignment:
Q  104 gtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcgg 203  Q
    |||||| ||||| |||||||||||||||| |||||||||||||||||| |||||||||||  ||||||| ||| ||||||||| ||||||||  ||||||    
T  34526370 gtggttaaatgatttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcgaacattcaccgcaaagaaatctcgg 34526469  T
Q  204 aaagggcatttacctcctaatt 225  Q
    ||||||||||||||||||||||    
T  34526470 aaagggcatttacctcctaatt 34526491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 104 - 225
Target Start/End: Original strand, 22464688 - 22464809
Alignment:
Q  104 gtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcgg 203  Q
    |||||| ||||| |||||||||||||||| |||||||||||||||||| |||||||||||  ||||||| |||  |||||||| ||||||||  |||||     
T  22464688 gtggttaaatgatttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcaaacattcaccgcaaagaaatctcga 22464787  T
Q  204 aaagggcatttacctcctaatt 225  Q
    ||||||||||||||||||||||    
T  22464788 aaagggcatttacctcctaatt 22464809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 115 - 210
Target Start/End: Original strand, 13308745 - 13308840
Alignment:
Q  115 acttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggc 210  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||| ||||||||| |  ||||||||||||||||||||    
T  13308745 acttgatgatatgttacaccgagcgagagatattcaagtcacttgatgatgttgatattattcgaacattcaccataaagaggtctcggaaagggc 13308840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 34317718 - 34317509
Alignment:
Q  18 ggaagtacacaagttatcaagccatgtcaataagctagtaa-----tcttataagcccgtgagaaagaattatga---atatgatcaacgatgtgtggtt 109  Q
    |||||| ||| |||||||||||  |||||||||||||||||     ||||||||  || |||||||||||| | |   | | |||||| |||||||||||    
T  34317718 ggaagtccaccagttatcaagctttgtcaataagctagtaaaagaatcttataaatccatgagaaagaattgttaccaacaagatcaatgatgtgtggtt 34317619  T
Q  110 caatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaaggg 209  Q
    ||||||||||||||||||||||| ||||   |||||||||||||||||| |||||||||||||  ||       ||| ||||||||||||||  |||| |    
T  34317618 caatgacttgatgatatgttacaccgagtaagagatattcaagtcacttcatgatgttgatattgtt------ctcaccgcaaagaggtctcaaaaagag 34317525  T
Q  210 catttacctcctaatt 225  Q
    ||||||||||||||||    
T  34317524 catttacctcctaatt 34317509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 34907624 - 34907723
Alignment:
Q  125 atgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggcatttacctcctaat 224  Q
    |||||||| ||| || |||||| ||| ||||||||||| |||||||||||||  ||||||||||| | ||| || ||| |||||||||||||||||||||    
T  34907624 atgttacaccgaacgagagatactcaggtcacttgatggtgttgatataattcaaacattcatcggagagaagtttcgaaaagggcatttacctcctaat 34907723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 225
Target Start/End: Complemental strand, 18426072 - 18425997
Alignment:
Q  150 aagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggcatttacctcctaatt 225  Q
    |||||||||||| |||||||||| ||| ||||||||| || |||||||||||  ||| |  |||||||||||||||    
T  18426072 aagtcacttgataatgttgatattattcgaacattcaccgtaaagaggtctcaaaaatgttatttacctcctaatt 18425997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 45121334 - 45121371
Alignment:
Q  188 cgcaaagaggtctcggaaagggcatttacctcctaatt 225  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  45121334 cgcaaagaggtctcggaaaagacatttacctcctaatt 45121371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 225
Target Start/End: Complemental strand, 26656452 - 26656377
Alignment:
Q  150 aagtcacttgatgat-gttgatataatttgaacattcatcgcaaagaggtctcggaaagggcatttacctcctaatt 225  Q
    ||||||||||| ||| |||||||| ||| ||||||||| ||||||||| |||  ||| || ||||||||||||||||    
T  26656452 aagtcacttgacgattgttgatattattcgaacattcaccgcaaagagatcttagaa-ggtcatttacctcctaatt 26656377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 120 - 225
Target Start/End: Original strand, 1430 - 1535
Alignment:
Q  120 atgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggcatttacctc 219  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||| |||||||||| |||||||||||||||||| ||||||| ||||    
T  1430 atgatatgttacaccgagcgggagatattcaaatcacttgatgatgttgatattattcgaacattcattgcaaagaggtctcggaaatggcatttgcctc 1529  T
Q  220 ctaatt 225  Q
    ||||||    
T  1530 ctaatt 1535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 104 - 225
Target Start/End: Original strand, 15832 - 15953
Alignment:
Q  104 gtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcgg 203  Q
    |||||| ||||| |||||||||||||||| |||||||||||||||||| |||||||||||  ||||||| ||| ||||||||| ||||||||  ||||||    
T  15832 gtggttaaatgatttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcgaacattcaccgcaaagaaatctcgg 15931  T
Q  204 aaagggcatttacctcctaatt 225  Q
    ||||||||||||||||||||||    
T  15932 aaagggcatttacctcctaatt 15953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 214330 - 214197
Alignment:
Q  92 gatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgca 191  Q
    ||||||| || ||||||| |||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||| ||| ||||||| |    |    
T  214330 gatcaacaatatgtggttgaatgacttgatgatatgttacaccgagcaggagatattcgagtcacttgatgatgttgatattattcgaacattaactcaa 214231  T
Q  192 aagaggtctcggaaagggcatttacctcctaatt 225  Q
    |||||||| ||||||||| |||||||||||||||    
T  214230 aagaggtcgcggaaagggaatttacctcctaatt 214197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 104 - 225
Target Start/End: Original strand, 197123 - 197244
Alignment:
Q  104 gtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaacattcatcgcaaagaggtctcgg 203  Q
    |||||| ||||| |||||||||||||||| |||||||||||||||||| |||||||||||  ||||||| |||  |||||||| ||||||||  |||||     
T  197123 gtggttaaatgaattgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcaaacattcaccgcaaagaaatctcga 197222  T
Q  204 aaagggcatttacctcctaatt 225  Q
    ||||||||||||||||||||||    
T  197223 aaagggcatttacctcctaatt 197244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 435605 - 435384
Alignment:
Q  19 gaagtacacaagttatcaagccatgtcaataagctagtaa-----tcttataagcccgtgagaaagaattatga---atatgatcaacgatgtgtggttc 110  Q
    ||||| ||| |||| |||| ||||||||||||| ||||||     |||||||||| ||||||||| |||| | |   | | ||||||  |||||||| ||    
T  435605 gaagtccaccagttgtcaacccatgtcaataagttagtaaaataatcttataagctcgtgagaaaaaattgttaccaacaagatcaataatgtgtggctc 435506  T
Q  111 aatgacttgatgatatg-----ttacatcgagcgggagatattcaagtcacttgatgatgttgatataatttgaac--attcatcgcaaagaggtctcgg 203  Q
    |||||||||||||||||     ||||| ||||||| |||||||||||||||||||| |||||||||| ||| ||||  ||| | ||| |||||||||||     
T  435505 aatgacttgatgatatgatatgttacaccgagcggaagatattcaagtcacttgattatgttgatattattagaacatattaaccgcgaagaggtctcga 435406  T
Q  204 aaagggcatttacctcctaatt 225  Q
    ||||| ||||||||||||||||    
T  435405 aaaggacatttacctcctaatt 435384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 954 - 1022
Alignment:
Q  157 ttgatgatgttgatataatttgaacattcatcgcaaagaggtctcggaaagggcatttacctcctaatt 225  Q
    |||||||||||||||| ||| ||||||||| |||||||||||||| ||||||||||||| |||||||||    
T  954 ttgatgatgttgatattattcgaacattcaccgcaaagaggtctccgaaagggcatttatctcctaatt 1022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University