View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12305_high_27 (Length: 250)
Name: NF12305_high_27
Description: NF12305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12305_high_27 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 27761718 - 27761937
Alignment:
| Q |
18 |
aagatgacccaagaagcatatgacaagggtctcgcttcttgaaggaaaaaccatcatggtcgtttagtgctaaacaaaggggataagtcatacatatcaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27761718 |
aagatgacccaagaagcatatgacaagggtctcgctttttgaag-aaaaaccttcatggtcgtttagtgctgaacaaaggggataagtcatacatatcaa |
27761816 |
T |
|
| Q |
118 |
aggatttgcttcagaagcttaccaagttgtggaacactacaggtaaatgaaaaatgttctctctcggatgtaggttttacgatttctaatttttaaatta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
27761817 |
aggatttgcttcagaagcttaccaagttgtggaacactactggtaaatgaaaaaggttctctcttggatgtaggttttatgatttctaatttttaaatta |
27761916 |
T |
|
| Q |
218 |
tgatgatttatgtttggtctg |
238 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
27761917 |
tgacgatttatgtttggtctg |
27761937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 237
Target Start/End: Complemental strand, 20268952 - 20268777
Alignment:
| Q |
62 |
gaaaaaccatcatggtcgtttagtgctaaacaaaggggataagtcatacatatcaaaggatttgcttcagaagcttaccaagttgtggaacactacaggt |
161 |
Q |
| |
|
|||||||| |||||| ||||| ||| | ||||||||||| ||| |||||| | ||||||||||| || |||| || || |||| ||||||| || | |
|
|
| T |
20268952 |
gaaaaaccttcatggacgtttggtgttgaacaaaggggacaagccatacacaacaaaggatttggttaagaaaatttccgagttatggaacatgactaga |
20268853 |
T |
|
| Q |
162 |
aaatgaaaaatgttctctctcggatgtaggttttacgatttctaatttttaaattatgatgatttatgtttggtct |
237 |
Q |
| |
|
||||| ||||| ||||||| ||| | ||||||| ||||| || |||| || |||||| |||||| |||||||| |
|
|
| T |
20268852 |
aaatggaaaattatctctcttggacatgggttttatgatttttagttttcaagttatgaagatttacatttggtct |
20268777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 237
Target Start/End: Complemental strand, 21055581 - 21055406
Alignment:
| Q |
62 |
gaaaaaccatcatggtcgtttagtgctaaacaaaggggataagtcatacatatcaaaggatttgcttcagaagcttaccaagttgtggaacactacaggt |
161 |
Q |
| |
|
|||||||| |||||| ||||| ||| | ||||||||||| ||| |||||| | ||||||||||| || |||| || || |||| ||||||| || | |
|
|
| T |
21055581 |
gaaaaaccttcatggacgtttggtgttgaacaaaggggacaagccatacacaacaaaggatttggttaagaaaatttccgagttatggaacatgactaga |
21055482 |
T |
|
| Q |
162 |
aaatgaaaaatgttctctctcggatgtaggttttacgatttctaatttttaaattatgatgatttatgtttggtct |
237 |
Q |
| |
|
||||| ||||| ||||||| ||| | ||||||| ||||| || |||| || |||||| |||||| |||||||| |
|
|
| T |
21055481 |
aaatggaaaattatctctcttggacatgggttttatgatttttagttttcaagttatgaagatttacatttggtct |
21055406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University