View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12305_high_28 (Length: 250)

Name: NF12305_high_28
Description: NF12305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12305_high_28
NF12305_high_28
[»] chr5 (10 HSPs)
chr5 (20-243)||(15823617-15823840)
chr5 (148-243)||(15837838-15837928)
chr5 (22-154)||(15813433-15813562)
chr5 (97-175)||(15721058-15721136)
chr5 (24-172)||(15723495-15723640)
chr5 (129-218)||(15819363-15819452)
chr5 (145-243)||(15839409-15839502)
chr5 (97-154)||(15717236-15717293)
chr5 (24-154)||(15729716-15729844)
chr5 (129-218)||(15836413-15836502)
[»] chr2 (1 HSPs)
chr2 (22-154)||(33100110-33100239)


Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 15823617 - 15823840
Alignment:
Q  20 taatgttctagaccaacaaacaatctcagccattaagatctaccaacaaaatttcaaactccaagttactgatggctacctaaacaccgagacttcacaa 119  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||    
T  15823617 taatgttctagaccaacaaacaatgtcagccattaagatctaccaacaaaatttcaatctccaagttactaatggctacctaaacactgagacttcacaa 15823716  T
Q  120 caaatcttgttaccacgttgtggtgttcctgatattaatttcgagtacagcttcaccaatgatatgtcgtttcccaaaggaaacaagtggtttcctaaga 219  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||     
T  15823717 caaatcttgttaccacgatgtggtgttcctgatatgaatttcgagtacagcttcaccaatgataagtcgtttcccaaaggaaacaagtgatttactaagg 15823816  T
Q  220 aaaaacaatatcttacctatgctt 243  Q
    ||||| ||||||||||||||||||    
T  15823817 aaaaagaatatcttacctatgctt 15823840  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 243
Target Start/End: Original strand, 15837838 - 15837928
Alignment:
Q  148 ctgatattaatttcgagtacagcttcaccaatgatatgtcgtttcccaaaggaaacaagtggtttcctaagaaaaaacaatatcttacctatgctt 243  Q
    ||||||| |||||||||||||||||||     |||| || |||||| |||||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  15837838 ctgatatgaatttcgagtacagcttca-----gataagttgtttccgaaaggaaacaagtggtttactaaggaaaaagaatatcttacctatgctt 15837928  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 15813433 - 15813562
Alignment:
Q  22 atgttctagaccaacaaacaatctcagccattaagatctaccaacaaaatttcaaactccaagttactgatggctacctaaacaccgagacttcacaaca 121  Q
    ||||||||||| |  ||||||| || || ||||||| ||||||||||  |||||| ||||||||||||| |    |||||||||||||||||| |||| |    
T  15813433 atgttctagacgaggaaacaatatccgctattaagacctaccaacaatttttcaatctccaagttactggta---acctaaacaccgagactttacaaaa 15813529  T
Q  122 aatcttgttaccacgttgtggtgttcctgatat 154  Q
    ||||| |||||| || |||||| ||||||||||    
T  15813530 aatctcgttaccgcgatgtggtattcctgatat 15813562  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 175
Target Start/End: Original strand, 15721058 - 15721136
Alignment:
Q  97 acctaaacaccgagacttcacaacaaatcttgttaccacgttgtggtgttcctgatattaatttcgagtacagcttcac 175  Q
    ||||| || ||||||||| ||||| | ||||||||||| | ||||||||||||||||| ||||| ||||||||||||||    
T  15721058 acctagactccgagactttacaactactcttgttaccaagatgtggtgttcctgatatgaattttgagtacagcttcac 15721136  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 172
Target Start/End: Original strand, 15723495 - 15723640
Alignment:
Q  24 gttctagaccaacaaacaatctcagccattaagatctaccaacaaaatttcaaactccaagttactgatggctacctaaacaccgagacttcacaacaaa 123  Q
    ||||||||| |  ||||||| || || ||||||| ||||||||||  |||||| ||||||||||||| |    |||||||||||||||||| |||||||     
T  15723495 gttctagacaaggaaacaatatccgctattaagacctaccaacaatttttcaatctccaagttactggtc---acctaaacaccgagactttacaacaat 15723591  T
Q  124 tcttgttaccacgttgtggtgttcctgatattaatttcgagtacagctt 172  Q
    ||| ||| ||| | |||||| |||||||||| || | ||||||| ||||    
T  15723592 tctcgtttccaagatgtggtattcctgatatgaaatacgagtacggctt 15723640  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 15819363 - 15819452
Alignment:
Q  129 ttaccacgttgtggtgttcctgatattaatttcgagtacagcttcaccaatgatatgtcgtttcccaaaggaaacaagtggtttcctaag 218  Q
    |||||||| ||||||||||||||||| ||||||  ||||  || |||||||||||| |||| ||| ||||||||| | ||||||||||||    
T  15819363 ttaccacgatgtggtgttcctgatatgaatttcacgtacgactccaccaatgatatatcgtatccgaaaggaaaccaatggtttcctaag 15819452  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 243
Target Start/End: Original strand, 15839409 - 15839502
Alignment:
Q  145 ttcctgatattaatttcgagtacagcttcaccaatgatatgtcgtttcccaaaggaaacaagtggtttcctaagaaaaaacaatatcttacctatgctt 243  Q
    |||||||||| |||||||||||||||||||     |||| || |||||| |||  ||||||||||||| || || ||||| ||||||||||||||||||    
T  15839409 ttcctgatatgaatttcgagtacagcttca-----gataagttgtttccgaaactaaacaagtggtttactgaggaaaaagaatatcttacctatgctt 15839502  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 15717236 - 15717293
Alignment:
Q  97 acctaaacaccgagacttcacaacaaatcttgttaccacgttgtggtgttcctgatat 154  Q
    ||||| |||||||||||| |||||||||| |||||||||| ||||||||||| |||||    
T  15717236 acctagacaccgagactttacaacaaatcatgttaccacgatgtggtgttcccgatat 15717293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 154
Target Start/End: Original strand, 15729716 - 15729844
Alignment:
Q  24 gttctagaccaacaaacaatctcagccattaagatctaccaacaaaatttcaaactccaagttactgatggctacctaaacaccgagacttcac-aacaa 122  Q
    ||||||||| |  ||||||| || || |||||||  |||||||||  |||||| ||||||||||||| |    |||||||||||||||||| || || ||    
T  15729716 gttctagacgaggaaacaatatccgctattaagacgtaccaacaatttttcaatctccaagttactggtc---acctaaacaccgagactttacaaaaaa 15729812  T
Q  123 atcttgttaccacgttgtggtgttcctgatat 154  Q
    |||| |||||| || |||||| ||||||||||    
T  15729813 atctcgttaccgcgatgtggtattcctgatat 15729844  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 15836413 - 15836502
Alignment:
Q  129 ttaccacgttgtggtgttcctgatattaatttcgagtacagcttcaccaatgatatgtcgtttcccaaaggaaacaagtggtttcctaag 218  Q
    |||||||| || |||||||||||||  | |||  |||||| ||| ||||||||||| || ||||| ||||||||| | ||||||||||||    
T  15836413 ttaccacgatgcggtgttcctgataggattttgaagtacaacttaaccaatgatatatcttttccgaaaggaaaccaatggtttcctaag 15836502  T

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Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 33100110 - 33100239
Alignment:
Q  22 atgttctagaccaacaaacaatctcagccattaagatctaccaacaaaatttcaaactccaagttactgatggctacctaaacaccgagacttcacaaca 121  Q
    ||||||||||| |  ||||||| || || ||||||| ||||||||||  |||||| ||||||||||||| |    |||||||||||||||||| |||| |    
T  33100110 atgttctagacgaggaaacaatatccgctattaagacctaccaacaatttttcaatctccaagttactggta---acctaaacaccgagactttacaaaa 33100206  T
Q  122 aatcttgttaccacgttgtggtgttcctgatat 154  Q
    ||||| |||||| || |||||| ||||||||||    
T  33100207 aatctcgttaccgcgatgtggtattcctgatat 33100239  T

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