View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12305_high_3 (Length: 643)
Name: NF12305_high_3
Description: NF12305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12305_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 17 - 587
Target Start/End: Original strand, 5401816 - 5402380
Alignment:
| Q |
17 |
ataatcaatgctacattttggacgtttcgtggtgcttccttgaattttgtgatctgtgtacatg----aatgaatgaattcacgttagttgaaaagaaaa |
112 |
Q |
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| T |
5401816 |
ataatcaatgctacattttggacgtttcgtggtgcttccttgaattttgtgatctgtgtacatgcatgaatgaatgaattcacgttagttgaaaagaaaa |
5401915 |
T |
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| Q |
113 |
attaatgaaggaaaattgtgaaacacggagctacggttaaacgtagtgtgtactaagataagaactttctttgccagttgatacatcaannnnnnnncct |
212 |
Q |
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| T |
5401916 |
attaatgaaggaaaattgtgaaacacggagctacggttaaacgtagtgtgtactaaga-----actttctttgccagttgatacatcaattttttttcct |
5402010 |
T |
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| Q |
213 |
cattgcccagtgcttattgtcattcataatagatatatcaaattaattagcattaaaatgaaaaatatagaacaaattttgttcgtaagaacttgccttg |
312 |
Q |
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| T |
5402011 |
cgttgcccagtgtttattgtcattcataatagatatatcaaattaattagcattaaaatgaaaaatatagaacaaatttagttcgtaagaacttgccttg |
5402110 |
T |
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| Q |
313 |
ccaggatgatcaccagttgctctagccaaccaccagttcattttattttcactatatactat----gcttggtgtaatgctatatattaagatttgtgat |
408 |
Q |
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| T |
5402111 |
ccaggatgatcaccagttgctctagccaaccaccagttcattttattttcactatatactatatatgcttggtgtaatgctat----taagatttgtgat |
5402206 |
T |
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| Q |
409 |
gctaatacttagatgtatctgttgcttgagagaatgattcccatgtgtatttatatgaaagaagaatagcatacatgcatgcatgctttgaatggttttc |
508 |
Q |
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| T |
5402207 |
gctaatacttggatgtatctgttgcttgagagaatgattcccatgtgtatttatatgaaagaagaatagcatacatgcatgcatgctttgaatggttttc |
5402306 |
T |
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| Q |
509 |
accggatgacaaaagcaaatacgcactttatgtggacgattctattcagtattgacatgacaacacatctatgcaaata |
587 |
Q |
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| T |
5402307 |
accatatgacaaaagcaaatacgcactttatgtggacgatactattcagtat-----tgacaacacatctatgcaaata |
5402380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 5395669 - 5395724
Alignment:
| Q |
17 |
ataatcaatgctacattttggacgtttcgtggtgcttccttgaattttgtgatctg |
72 |
Q |
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| T |
5395669 |
ataatcaatgctacattttggaagcttcctggtgcttccttgaattctgtaatctg |
5395724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 5391859 - 5391914
Alignment:
| Q |
17 |
ataatcaatgctacattttggacgtttcgtggtgcttccttgaattttgtgatctg |
72 |
Q |
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| T |
5391859 |
ataattaatgctacattttggaagcttcgtggtgattccttgaattctgtaatctg |
5391914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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