View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12305_high_33 (Length: 242)
Name: NF12305_high_33
Description: NF12305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12305_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 6707000 - 6707210
Alignment:
| Q |
13 |
cagatcatgacgtctgacctaaaattttcggcatttttactagttgagctatgacttatacgacatttcccgttaaaaataggaaaatgcaaaattaagt |
112 |
Q |
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| T |
6707000 |
cagatcatgacgtctggcctaaaattttcggcatttttattagttgagctatgacttataggacattccccgttaaaaataggaaaatgcaaaattaagt |
6707099 |
T |
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| Q |
113 |
atgaatagaacaagagataatcagaccttcatgcttcatatttttgcatttttggcatgatctaacatgtcgatactcagtcgaaaaaataaaacatgtt |
212 |
Q |
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| T |
6707100 |
atgaatagaacaagagataatcagaacttcatgcttcatatttttgcattttcggcatgatctaacatgtcgatactcagtcgaaaaaataaaacaagtt |
6707199 |
T |
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| Q |
213 |
gttgacaccta |
223 |
Q |
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||||||||||| |
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| T |
6707200 |
gttgacaccta |
6707210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 17540148 - 17540202
Alignment:
| Q |
17 |
tcatgacgtctgacctaaaattttcggcatttttactagttgagctatgacttat |
71 |
Q |
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| T |
17540148 |
tcatgacgtctggcctaacaatttcggcatttttactagttgagctaggacttat |
17540202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 26186208 - 26186255
Alignment:
| Q |
16 |
atcatgacgtctgacctaaaattttcggcatttttactagttgagcta |
63 |
Q |
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| T |
26186208 |
atcatgacgtctggcctaacaatttcgacatttttactagttgagcta |
26186255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 47498079 - 47498021
Alignment:
| Q |
13 |
cagatcatgacgtctgacctaaaattttcggcatttttactagttgagctatgacttat |
71 |
Q |
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| T |
47498079 |
cagatcatgacgtctgacctaacaatttcgacatatttaccagttaagctaggacttat |
47498021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 40368843 - 40368897
Alignment:
| Q |
75 |
acatttcccgttaaaaataggaaaatgcaaaattaagtatgaatagaacaagaga |
129 |
Q |
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| T |
40368843 |
acattccctgttaataaaagggaaatgcaaaattaggtatgaatagaacaagaga |
40368897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 33128235 - 33128291
Alignment:
| Q |
15 |
gatcatgacgtctgacctaaaattttcggcatttttactagttgagctatgacttat |
71 |
Q |
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| T |
33128235 |
gatcatgacgttcggcctaacaatttcagcatttttgctagttgagctatgacttat |
33128291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 42997101 - 42997157
Alignment:
| Q |
15 |
gatcatgacgtctgacctaaaattttcggcatttttactagttgagctatgacttat |
71 |
Q |
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||||||||||||| |||||| | ||||| || |||||| |||||||||| ||||||| |
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| T |
42997101 |
gatcatgacgtctaacctaacagtttcgacagttttaccagttgagctaggacttat |
42997157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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