View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12305_high_37 (Length: 208)
Name: NF12305_high_37
Description: NF12305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12305_high_37 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 27395480 - 27395633
Alignment:
| Q |
18 |
ggacgcacctaatctgatgagtgactaactaactattcaataaacagtggattgaagaggagtccttaatgtgtcatcaatgtcaaagaaatgacagtgg |
117 |
Q |
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| T |
27395480 |
ggactcacctaatccgatgagtgactaactaactattcaataaacagtggattgaagaggagtccttaatgtgtcatcaatgtcaaagaaatgacagtgg |
27395579 |
T |
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| Q |
118 |
cagggttgtcagatgcaccaaatgcaaacggaaaagatatcgtgtatgctgtat |
171 |
Q |
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| T |
27395580 |
cagggttgtcagatgcaccaaatgcaaacggaaaagatattgtttatcctgtat |
27395633 |
T |
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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 155
Target Start/End: Original strand, 51479401 - 51479503
Alignment:
| Q |
53 |
ttcaataaacagtggattgaagaggagtccttaatgtgtcatcaatgtcaaagaaatgacagtggcagggttgtcagatgcaccaaatgcaaacggaaaa |
152 |
Q |
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| T |
51479401 |
ttcaattaacagtggattgcagaggagtccttaatgtgccatcaatgtcagagaaatgacaagggcagggttgtcagatgcacaaaatgcaaacggaaaa |
51479500 |
T |
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| Q |
153 |
gat |
155 |
Q |
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||| |
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| T |
51479501 |
gat |
51479503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 53 - 157
Target Start/End: Original strand, 51454891 - 51454995
Alignment:
| Q |
53 |
ttcaataaacagtggattgaagaggagtccttaatgtgtcatcaatgtcaaagaaatgacagtggcagggttgtcagatgcaccaaatgcaaacggaaaa |
152 |
Q |
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| T |
51454891 |
ttcaatcaacagtggattgaagagggatccttaatgtgtcatcaatgtcagagaaacgataagggcagggttgtcagatgcacaaaatgcaaacggagaa |
51454990 |
T |
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| Q |
153 |
gatat |
157 |
Q |
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||||| |
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| T |
51454991 |
gatat |
51454995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 51496380 - 51496483
Alignment:
| Q |
54 |
tcaataaacagtggattgaagaggagtccttaatgtgtcatcaatgtcaaagaaatgacagtggcagggttgtcagatgcaccaaatgcaaacggaaaag |
153 |
Q |
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| T |
51496380 |
tcaatcaacagtggatcgaagaggaatccttgatgtgccatcaatgtcagagaaatgacaagggcagggttgttagatgcacaaaatgcaaacggaaaag |
51496479 |
T |
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| Q |
154 |
atat |
157 |
Q |
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|||| |
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| T |
51496480 |
atat |
51496483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 7996926 - 7996979
Alignment:
| Q |
53 |
ttcaataaacagtggattgaagaggagtccttaatgtgtcatcaatgtcaaaga |
106 |
Q |
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|||||| ||| ||||||||||||||| ||||||| | | ||||||||||||||| |
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| T |
7996926 |
ttcaatcaacggtggattgaagaggaatccttaacgagccatcaatgtcaaaga |
7996979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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