View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12305_high_4 (Length: 620)

Name: NF12305_high_4
Description: NF12305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12305_high_4
NF12305_high_4
[»] chr3 (3 HSPs)
chr3 (16-348)||(19768624-19768956)
chr3 (196-416)||(29199150-29199369)
chr3 (16-65)||(29200163-29200212)
[»] chr8 (6 HSPs)
chr8 (412-524)||(6174300-6174412)
chr8 (544-610)||(6173960-6174026)
chr8 (544-609)||(6135900-6135965)
chr8 (452-524)||(6136245-6136317)
chr8 (172-231)||(2685044-2685103)
chr8 (415-524)||(6119117-6119226)
[»] chr4 (6 HSPs)
chr4 (16-100)||(37616579-37616663)
chr4 (289-416)||(25901099-25901225)
chr4 (172-231)||(5478209-5478268)
chr4 (270-312)||(50227374-50227416)
chr4 (17-53)||(1659810-1659846)
chr4 (17-53)||(32226087-32226123)
[»] chr2 (1 HSPs)
chr2 (172-231)||(45008469-45008528)


Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 16 - 348
Target Start/End: Original strand, 19768624 - 19768956
Alignment:
Q  16 cagatttcagtttctaacatgttaaaattaagttatatcaattaactcatgtactcatgcctctaaaactatctgcattttttattcttggcaggttatt 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19768624 cagattttagtttctaacatgttaaaattaagttatatcaattaactcatgtactgatgcctctaaaactatctgcattttttattcttggcaggttatt 19768723  T
Q  116 ggaagaaaatggtgcatgttgtttagccattatcgttgtggaacctatccgtcaatgaatttgaggcaggggaggggaaccttaaatcatgtgcaaactg 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  19768724 ggaagaaaatggtgcatgttgtttagccattatcgttgtggaacctatccgtcaatgaatttgaggca-gggagaggaaccttaaatcatgtgcaaactg 19768822  T
Q  216 agaaggagaaatttgagaagctga-ttttgtttgagcttgaatctgacggagaaaggttcttatgggtaaattttcttcttccacttttatttgtttctt 314  Q
    |||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19768823 agaaggagaaatttgagaagctgattttttttttagcttgaatctgacggagaaaggttcttatgggtaaattttcttcttccacttttatttgtttctt 19768922  T
Q  315 tgtcatctcttttgctatagaagaaactataaca 348  Q
    | |||||| |||||||||||||||||||||||||    
T  19768923 tctcatctattttgctatagaagaaactataaca 19768956  T

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Target: chr3; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 196 - 416
Target Start/End: Original strand, 29199150 - 29199369
Alignment:
Q  196 cttaaatcatgtgcaaactgagaaggagaaatttgagaagctgattttgtttgagcttgaatctgacggagaaaggttcttatgggtaaattttcttctt 295  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||| |||||||||    
T  29199150 cttaaatcatgtgcaaaatgagaaggagaaatttgagaagctgattttgtttgaatttgaatctgacggagaaaggttcttatggataaagtttcttctt 29199249  T
Q  296 ccacttttatttgtttctttgtcatctcttttgctatagaagaaactataacagttggatcttcatgttctcttattcatannnnnnnctcttgagattt 395  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||       ||||| ||||||    
T  29199250 ccacttttatttgtttctttctcatctattttgctatagaagaaactagaacagttggatcgtcatgttctcttattcata-ttttttctctttagattt 29199348  T
Q  396 atctatattgaaattgttcac 416  Q
    |||||||||||||||||||||    
T  29199349 atctatattgaaattgttcac 29199369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 29200163 - 29200212
Alignment:
Q  16 cagatttcagtttctaacatgttaaaattaagttatatcaattaactcat 65  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29200163 cagatttcagtttctaacatgttaaaaataagttatatcaattaactcat 29200212  T

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Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 412 - 524
Target Start/End: Complemental strand, 6174412 - 6174300
Alignment:
Q  412 ttcacttttctcgcctttcaacagagacaaaagttttcctgtgatgatgatttacacccttctattgctccgacaagattaaattcaacaaacatgtcga 511  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| ||| |||||    
T  6174412 ttcacttttctcacctttcaacagagacaaaagttttccagtgatgatgatttacactcttctatttctccgacaagattaaattcaacagacaggtcga 6174313  T
Q  512 agacagatgaggt 524  Q
    |||||||||||||    
T  6174312 agacagatgaggt 6174300  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 544 - 610
Target Start/End: Complemental strand, 6174026 - 6173960
Alignment:
Q  544 cttgaaaaagaccctttggcaatcatggaaaaactcttatctggtgaacttggtcattcttcacagg 610  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6174026 cttgaagaagaccctttggcaatcatggaaaaactcttatctggtgaacttggtcattcttcacagg 6173960  T

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Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 544 - 609
Target Start/End: Complemental strand, 6135965 - 6135900
Alignment:
Q  544 cttgaaaaagaccctttggcaatcatggaaaaactcttatctggtgaacttggtcattcttcacag 609  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6135965 cttgaagaagaccctttggcaatcatggacaaactcttatctggtgaacttggtcattcttcacag 6135900  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 452 - 524
Target Start/End: Complemental strand, 6136317 - 6136245
Alignment:
Q  452 gtgatgatgatttacacccttctattgctccgacaagattaaattcaacaaacatgtcgaagacagatgaggt 524  Q
    |||||||||| || |||||||||||| |||| ||||||||||||||| |||||| ||||||||||||||||||    
T  6136317 gtgatgatgaattgcacccttctatttctccaacaagattaaattcagcaaacaagtcgaagacagatgaggt 6136245  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 2685103 - 2685044
Alignment:
Q  172 gaatttgaggcaggggaggggaaccttaaatcatgtgcaaactgagaaggagaaatttga 231  Q
    |||||||||| ||||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  2685103 gaatttgagggaggggagtggaacctcaaatcatgtgcaaaatgagaaggagaaatttga 2685044  T

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Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 415 - 524
Target Start/End: Original strand, 6119117 - 6119226
Alignment:
Q  415 acttttctcgcctttcaacagagacaaaagttttcctgtgatgatgatttacacccttctattgctccgacaagattaaattcaacaaacatgtcgaaga 514  Q
    ||||||||  |||||||||||||| |  ||| ||||  |||| |||| |||||| |||||||| |||| ||||||||||||||| || |||  |||||||    
T  6119117 acttttctttcctttcaacagagagacgagtcttccgttgattatgaattacactcttctatttctccaacaagattaaattcagcagacaattcgaaga 6119216  T
Q  515 cagatgaggt 524  Q
    ||||||||||    
T  6119217 cagatgaggt 6119226  T

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Target: chr4 (Bit Score: 81; Significance: 8e-38; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 37616663 - 37616579
Alignment:
Q  16 cagatttcagtttctaacatgttaaaattaagttatatcaattaactcatgtactcatgcctctaaaactatctgcattttttat 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37616663 cagatttaagtttctaacatgttaaaattaagttatatcaattaactcatgtactcatgcctctaaaactatctgcattttttat 37616579  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 289 - 416
Target Start/End: Complemental strand, 25901225 - 25901099
Alignment:
Q  289 tcttcttccacttttatttgtttctttgtcatctcttttgctatagaagaaactataacagttggatcttcatgttctcttattcatannnnnnnctctt 388  Q
    ||||||||||||||||||||||||||| |||||| |||||| ||||||||||||| || || ||| ||||||||||||||||||||||       |||||    
T  25901225 tcttcttccacttttatttgtttctttctcatctattttgccatagaagaaactagaatagatgggtcttcatgttctcttattcata-ctttttctctt 25901127  T
Q  389 gagatttatctatattgaaattgttcac 416  Q
    |||||||||||| |||||||||||||||    
T  25901126 gagatttatctacattgaaattgttcac 25901099  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 5478209 - 5478268
Alignment:
Q  172 gaatttgaggcaggggaggggaaccttaaatcatgtgcaaactgagaaggagaaatttga 231  Q
    |||||||||| ||||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  5478209 gaatttgagggaggggagtggaacctcaaatcatgtgcaaaatgagaaggagaaatttga 5478268  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 50227416 - 50227374
Alignment:
Q  270 ggttcttatgggtaaattttcttcttccacttttatttgtttc 312  Q
    |||||||||||||||| ||||||||| ||||||||||||||||    
T  50227416 ggttcttatgggtaaagtttcttctttcacttttatttgtttc 50227374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 1659846 - 1659810
Alignment:
Q  17 agatttcagtttctaacatgttaaaattaagttatat 53  Q
    ||||||||||||||||||||||||||| |||||||||    
T  1659846 agatttcagtttctaacatgttaaaatcaagttatat 1659810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 32226123 - 32226087
Alignment:
Q  17 agatttcagtttctaacatgttaaaattaagttatat 53  Q
    ||||||||||||||||||||||||||| |||||||||    
T  32226123 agatttcagtttctaacatgttaaaatcaagttatat 32226087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 45008528 - 45008469
Alignment:
Q  172 gaatttgaggcaggggaggggaaccttaaatcatgtgcaaactgagaaggagaaatttga 231  Q
    |||||||||| ||||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  45008528 gaatttgagggaggggagtggaacctcaaatcatgtgcaaaatgagaaggagaaatttga 45008469  T

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