View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12305_high_5 (Length: 503)
Name: NF12305_high_5
Description: NF12305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12305_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 278
Target Start/End: Complemental strand, 13753669 - 13753408
Alignment:
| Q |
17 |
aataaatattttcattgataataaagggcaccacataattagaatttcgatagaaactaggttgacaccccaaatcgatcgcctcatgattcgcagcaac |
116 |
Q |
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| T |
13753669 |
aataaatattttcattgataataaagggcaccatataattagaatttcgatagaaactaggttgacaccccaaatcgatagcctcatgattcgcagcaac |
13753570 |
T |
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| Q |
117 |
ctaaaaaatagattaaaattacgatggaaaaaatggagcttaggggactaagccaatacccaaagtaacaacattgtgcaataacaacaactacctcatt |
216 |
Q |
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| T |
13753569 |
ctaaaaaatagattaaaattacgatggaaaaaatggagcttaggggactaagtcaatacccaaagtaacaagattgtgcaataacaacaactacctcatt |
13753470 |
T |
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| Q |
217 |
aaaaaccttgccataaaagtatggtataggaaaaaagagtgtagtgcaaagaaacaacagtt |
278 |
Q |
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| T |
13753469 |
aaaaaccttgccataaaagtatggtataggaaaaaagaatgtagtgcaaagaaacaacagtt |
13753408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 351 - 494
Target Start/End: Complemental strand, 13752672 - 13752529
Alignment:
| Q |
351 |
gattcacacaactgcaattcttcaacatttggaaaagtaggcaagtcagtcaactttgggcatttgttgattattagttgagagagacgacccaatggcg |
450 |
Q |
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| T |
13752672 |
gattcacacaactgcaattcttcaacatttggaaaagtaggcaagtcagtcaactttgggcatttgttgattattagttgagagagaggacccaatggcg |
13752573 |
T |
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| Q |
451 |
gctgcgagagtttatctacactgacctgaccttccattctctgc |
494 |
Q |
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| T |
13752572 |
gccgcgagagtatatctacactgacctgaccttccattctctgc |
13752529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 351 - 494
Target Start/End: Complemental strand, 6116270 - 6116127
Alignment:
| Q |
351 |
gattcacacaactgcaattcttcaacatttggaaaagtaggcaagtcagtcaactttgggcatttgttgattattagttgagagagacgacccaatggcg |
450 |
Q |
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| T |
6116270 |
gattcacacaactgcaattcctcaacatttggaaaagtaggcaagtcagtcaactctgggcatttgttgattattagttgagagagacgacccaatggcg |
6116171 |
T |
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| Q |
451 |
gctgcgagagtttatctacactgacctgaccttccattctctgc |
494 |
Q |
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| T |
6116170 |
ggtgcgagagtttatctacactgacctgacgtttcattctctgc |
6116127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 351 - 492
Target Start/End: Original strand, 6123168 - 6123309
Alignment:
| Q |
351 |
gattcacacaactgcaattcttcaacatttggaaaagtaggcaagtcagtcaactttgggcatttgttgattattagttgagagagacgacccaatggcg |
450 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
6123168 |
gattcacacaactgcaattcctcaacatttggaaaagtaggcaagtcagtcaactttgggcatttgttgattattagttgagagagacggacgaatggcc |
6123267 |
T |
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| Q |
451 |
gctgcgagagtttatctacactgacctgaccttccattctct |
492 |
Q |
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| T |
6123268 |
gctgcgagtgtttatctacactgacctgaccttccgttctct |
6123309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 261 - 352
Target Start/End: Complemental strand, 13753234 - 13753143
Alignment:
| Q |
261 |
tgcaaagaaacaacagttaaattcataaagaaagcaacacaacataaacaatacaatccttgaaaatatgagagcagtagaaacgcatacga |
352 |
Q |
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| T |
13753234 |
tgcaaagaaacaacagttaaattcataaagaaagcaacacaacataaacaatacaatccttgaaaataggagagcagtagaaacgcatacga |
13753143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 82 - 275
Target Start/End: Complemental strand, 6117603 - 6117411
Alignment:
| Q |
82 |
caccccaaatcgatcgcctcatgattcgcagcaacctaaaaaatagattaaaattacgatggaaaaaatggagcttaggggactaagccaatacccaaag |
181 |
Q |
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|||||||||||||||| || || ||| |||||| | ||||||||| |||||||| | ||| |||||||| || || | ||||| |||||||||||| |
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| T |
6117603 |
caccccaaatcgatcgtctgatcatttgcagcatcataaaaaatatattaaaataaagatagaaaaaataaagattgcgagactagatcaatacccaaag |
6117504 |
T |
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| Q |
182 |
taacaacattgtgcaataacaacaactacctcattaaaaaccttgccataaaagtatggtataggaaaaaagagtgtagtgcaaagaaacaaca |
275 |
Q |
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| T |
6117503 |
taacaatattgtacaagaacatcaactacctcgttaaaaaccttaccataaaa-tatggtataggaaaaaagagtgtagtgcaaagaaacaaca |
6117411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 348
Target Start/End: Complemental strand, 6117412 - 6117359
Alignment:
| Q |
295 |
caacacaacataaacaatacaatccttgaaaatatgagagcagtagaaacgcat |
348 |
Q |
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||||||||||||||| | ||||||| |||||||||||||||| ||||||||||| |
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| T |
6117412 |
caacacaacataaactacacaatccctgaaaatatgagagcaatagaaacgcat |
6117359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 6117921 - 6117874
Alignment:
| Q |
19 |
taaatattttcattgataataaagggcaccacataattagaatttcga |
66 |
Q |
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||||| ||||||| |||| |||||||||| |||||||||||||||||| |
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| T |
6117921 |
taaatgttttcatagatagtaaagggcacgacataattagaatttcga |
6117874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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