View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12305_low_12 (Length: 407)
Name: NF12305_low_12
Description: NF12305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12305_low_12 |
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| [»] scaffold0867 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 238 - 402
Target Start/End: Complemental strand, 22082687 - 22082522
Alignment:
| Q |
238 |
atatgagttgcagctgatgactttttcgttcaatgtgattataataacatgcat-tatattgaaacacaatcaagcttgctatagaggcaacctaattag |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
22082687 |
atatgagttgcagctgatgactttttcgttcaatgtgattataataacattaacatgcattgaaacacaatcaagcttgctatagaggcaacctaattat |
22082588 |
T |
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| Q |
337 |
cataaactcatcaagagtaagaacacaatcatagccacattgccacacatatatgttcatctcact |
402 |
Q |
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| T |
22082587 |
cataaactcatcaagagtaagaacacaatcatagccacattgccacacatatatgttcatatcact |
22082522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 22071891 - 22071834
Alignment:
| Q |
76 |
atatggcgaagccaacatcataaacaattttaacacccgggaagaacaagagtgcaat |
133 |
Q |
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| T |
22071891 |
atatggccaagccaacatcataaacaattttaacaccccagaagaacaagaatgcaat |
22071834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 22065863 - 22065824
Alignment:
| Q |
143 |
ctaataactatcattttacatgatatatcaaaaatagaaa |
182 |
Q |
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| T |
22065863 |
ctaataactatcattttacatgatatatcaaaaatagaaa |
22065824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 177
Target Start/End: Complemental strand, 22082813 - 22082774
Alignment:
| Q |
138 |
ataaactaataactatcattttacatgatatatcaaaaat |
177 |
Q |
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| T |
22082813 |
ataaactaataactatcattttacatgatatatcaaaaat |
22082774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 306 - 393
Target Start/End: Complemental strand, 22065361 - 22065272
Alignment:
| Q |
306 |
atcaagcttgctatagaggcaacctaattagcataaactcatcaagagtaagaacacaatcat--agccacattgccacacatatatgtt |
393 |
Q |
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||||||||||| | ||||||||| | ||||||| |||||||| ||||||| ||| ||||||| ||||||||||||||| ||||||||| |
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| T |
22065361 |
atcaagcttgccaaagaggcaacattattagcaaaaactcataaagagtaggaatgcaatcatagagccacattgccacatatatatgtt |
22065272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0867 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0867
Description:
Target: scaffold0867; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 306 - 373
Target Start/End: Original strand, 3994 - 4061
Alignment:
| Q |
306 |
atcaagcttgctatagaggcaacctaattagcataaactcatcaagagtaagaacacaatcatagcca |
373 |
Q |
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| T |
3994 |
atcaagcttgccatagaggcaacctaattagccataactcattaagattacgatcacaatcatagcca |
4061 |
T |
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