View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12305_low_2 (Length: 699)
Name: NF12305_low_2
Description: NF12305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12305_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 7e-91; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 296 - 676
Target Start/End: Complemental strand, 40278409 - 40278035
Alignment:
| Q |
296 |
tggtgccatatagcctggacctattgatgtattggtccatactggaccaatttttcccacca-tagattaggctatcataccaaatcttaaacatggtca |
394 |
Q |
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| T |
40278409 |
tggtgccgtatagcctggacctattgatgtattggtccatactggaccaatttttcccaccattggattaggctatcctacctaatctt-aacatggtca |
40278311 |
T |
|
| Q |
395 |
tctacaccaaatataataatctttcaactcta--tctttcgtttctctctctttctccggtatcactagcaccaagtttatttattattattgtgtattc |
492 |
Q |
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||| |||||||| ||| ||||||||||||| ||| |||||||||||||||||||| |||||||| ||||||||||| | |||||||||||||||| |
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| T |
40278310 |
tctgcaccaaat---atagtctttcaactctatctctctcgtttctctctctttctccagtatcactggcaccaagtttgt---ttattattgtgtattc |
40278217 |
T |
|
| Q |
493 |
caatttttggatttgggtggtgattgtgttcatttacataataatcttgctgctaaacaataacaataaatttaccttgctgctaaaccttaacgttgag |
592 |
Q |
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||| |||||||||||||||||||||||||||||||||| || || | ||||||||||||||||| | ||||| |||||| | ||| |||| |
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| T |
40278216 |
caacttttggatttgggtggtgattgtgttcatttacagttta--tttcgaattgaacaataacaataaattcattttgctactaaacttcaacattgaa |
40278119 |
T |
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| Q |
593 |
cagaataatctctccctctccgccgagttccccaaactcaaatctcatttctactaccttcaacactccctagaccaacgccta |
676 |
Q |
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| T |
40278118 |
cagaataatctctccctctatgctgagttccccaaactcaaatctcatttctacaaccttcaacactacctcaatcaacgccta |
40278035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 47724241 - 47724151
Alignment:
| Q |
57 |
atcttgagaaagtgtacattggtattcaatcaattcaatgagttacaccaaactgctcttgtttttggtttacctgtacataatgtaattc |
147 |
Q |
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| T |
47724241 |
atcttgagaaagtgtacattggtattcaatcaattgaatgagttacaccaaactgctcttgtttttggtttacctgtacataatgtaattc |
47724151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 225 - 283
Target Start/End: Complemental strand, 47724096 - 47724038
Alignment:
| Q |
225 |
acagtgatacataaacactctgtatgtattccctaacacttattattattaaacacctt |
283 |
Q |
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| T |
47724096 |
acagtaatacataaacactctgtatgtattccctaacacttattattattaaacacctt |
47724038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 4e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 297 - 689
Target Start/End: Complemental strand, 34457254 - 34456868
Alignment:
| Q |
297 |
ggtgccatatagcctggacctattgatgtattggtccatactggaccaatttttcccacca-tagattaggctatcataccaaatcttaaacatggtcat |
395 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||| ||| || ||||||||||| |
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| T |
34457254 |
ggtgccgtatagcctagacctattgatgtattggtccatactggaccaatttttcccaccattggattaggctatcctacctaat-tttaacatggtcat |
34457156 |
T |
|
| Q |
396 |
ctacaccaaatataataatctttcaactcta--tctttcgtttctctctctttctccggtatcactagcaccaagtttatttattattattgtgtattcc |
493 |
Q |
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|| |||||||| ||| |||||||| |||| ||| |||||||||||||||||||| ||||||| |||||||||||| | ||||||||||||||||| |
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| T |
34457155 |
ctgcaccaaat---atagtctttcaattctatctctctcgtttctctctctttctccagtatcaccagcaccaagtttgt---ttattattgtgtattcc |
34457062 |
T |
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| Q |
494 |
aatttttggatttgggtggtgattgtgttcatttacataataatcttgctgctaaacaataacaataaatttaccttgctgctaaaccttaacgttgagc |
593 |
Q |
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|| |||||||||||||||||||||||||||||||||| || || | ||||||||||||||||| | ||||| |||||| | ||| |||| | |
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| T |
34457061 |
aacttttggatttgggtggtgattgtgttcatttacagttta--tttcgaattgaacaataacaataaattcattttgctactaaacttcaacattgaac |
34456964 |
T |
|
| Q |
594 |
agaataatctctccctctccgccgagttccccaaactcaaatctcatttctactaccttcaacactccctagaccaacgcctatttgccctctctg |
689 |
Q |
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| T |
34456963 |
agaataatctctccctctatgctgagttccccaaactcaaatctcatttctacaaccttcaacactacctcaatcaacgcctatgtgtcctctctg |
34456868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 299 - 358
Target Start/End: Original strand, 38582148 - 38582207
Alignment:
| Q |
299 |
tgccatatagcctggacctattgatgtattggtccatactggaccaatttttcccaccat |
358 |
Q |
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| T |
38582148 |
tgccatttagcttggacccattgagatattggtccatgatggaccaatttttcccaccat |
38582207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 350
Target Start/End: Complemental strand, 49251498 - 49251445
Alignment:
| Q |
297 |
ggtgccatatagcctggacctattgatgtattggtccatactggaccaattttt |
350 |
Q |
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| T |
49251498 |
ggtgccatttagcttggacctattgaagttttggtccatgatggaccaattttt |
49251445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 296 - 350
Target Start/End: Complemental strand, 44658340 - 44658286
Alignment:
| Q |
296 |
tggtgccatatagcctggacctattgatgtattggtccatactggaccaattttt |
350 |
Q |
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||||||||| |||| |||||||||||| || |||||||||| ||||||||||||| |
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| T |
44658340 |
tggtgccatttagcttggacctattgaagttttggtccataatggaccaattttt |
44658286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 295 - 345
Target Start/End: Original strand, 25376289 - 25376339
Alignment:
| Q |
295 |
atggtgccatatagcctggacctattgatgtattggtccatactggaccaa |
345 |
Q |
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|||||||||| |||| ||||| || ||||||||||||||||||||||||| |
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| T |
25376289 |
atggtgccatttagcatggactcatagatgtattggtccatactggaccaa |
25376339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 350
Target Start/End: Complemental strand, 44827682 - 44827629
Alignment:
| Q |
297 |
ggtgccatatagcctggacctattgatgtattggtccatactggaccaattttt |
350 |
Q |
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|||| ||| |||| |||||||||||| | ||||||||||| ||||||||||||| |
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| T |
44827682 |
ggtggcatttagcatggacctattgaagaattggtccataatggaccaattttt |
44827629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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