View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12305_low_21 (Length: 334)
Name: NF12305_low_21
Description: NF12305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12305_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 321
Target Start/End: Complemental strand, 26003909 - 26003597
Alignment:
| Q |
12 |
aacctgtgcaatatctttgtactnnnnnnntgtttatcattaaatcaagatcattttacnnnnnnnttactttatacatcctattccctctctcctcagc |
111 |
Q |
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| T |
26003909 |
aacctctgcaatatctttgtactaaaaaaatgtttatcattaaatcaagatcattatacaaaaaagttactttatacatcctattc----tctcctcagc |
26003814 |
T |
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| Q |
112 |
tacaggttacaaaatttcaccaaatttctgctatttttacagaataatatctaggtactctattttagggcaccgtctttctttctgttaactattatca |
211 |
Q |
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|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26003813 |
tataggttacaaaattttaccaaatttctgctatttttacagaataatatctaggtactctattttagggcaccgtctttctttctgttaactattatca |
26003714 |
T |
|
| Q |
212 |
cattccctatctacagactaattgtaatgaagaatgttaaagaatgaaatgaaggcatcctatcatccta-------tagcatctacagttcagattgaa |
304 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
26003713 |
cattccctatctactgactaattgtaatgaagaatgttaaagaatgaaatgaaggcatcctatcatcctaatttatgtagcatctacacttcagattgaa |
26003614 |
T |
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| Q |
305 |
gacgtctctgatgtcca |
321 |
Q |
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|||||||||| |||||| |
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| T |
26003613 |
gacgtctctggtgtcca |
26003597 |
T |
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