View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12305_low_23 (Length: 327)

Name: NF12305_low_23
Description: NF12305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12305_low_23
NF12305_low_23
[»] chr4 (33 HSPs)
chr4 (18-314)||(7262499-7262794)
chr4 (26-118)||(11035085-11035177)
chr4 (26-109)||(23349152-23349235)
chr4 (34-157)||(31713141-31713264)
chr4 (31-157)||(22830248-22830374)
chr4 (31-157)||(22306277-22306403)
chr4 (28-157)||(53141018-53141146)
chr4 (26-157)||(52801799-52801929)
chr4 (26-158)||(52180360-52180491)
chr4 (27-118)||(44810123-44810214)
chr4 (63-157)||(8589414-8589508)
chr4 (31-120)||(27790674-27790763)
chr4 (26-163)||(42755734-42755870)
chr4 (44-132)||(9930930-9931018)
chr4 (27-111)||(50981238-50981322)
chr4 (44-132)||(51806459-51806547)
chr4 (43-118)||(29405493-29405567)
chr4 (43-157)||(46081140-46081253)
chr4 (26-119)||(25938750-25938842)
chr4 (28-157)||(45097969-45098096)
chr4 (77-157)||(1757622-1757702)
chr4 (26-118)||(26337237-26337329)
chr4 (26-118)||(28233750-28233842)
chr4 (26-118)||(29148642-29148733)
chr4 (26-118)||(32655145-32655236)
chr4 (26-118)||(42052893-42052984)
chr4 (26-157)||(39804700-39804831)
chr4 (26-118)||(23147798-23147889)
chr4 (26-118)||(38000989-38001080)
chr4 (53-116)||(1730680-1730742)
chr4 (27-122)||(24487039-24487133)
chr4 (26-118)||(21076219-21076310)
chr4 (76-104)||(56444737-56444765)
[»] chr7 (32 HSPs)
chr7 (31-131)||(36073113-36073213)
chr7 (31-161)||(45116259-45116389)
chr7 (39-148)||(40855504-40855612)
chr7 (40-157)||(25047355-25047472)
chr7 (31-158)||(40341796-40341923)
chr7 (28-157)||(17171801-17171929)
chr7 (28-157)||(44301117-44301245)
chr7 (26-163)||(3551129-3551265)
chr7 (27-156)||(25309112-25309240)
chr7 (26-161)||(16567957-16568091)
chr7 (26-161)||(16597571-16597705)
chr7 (26-130)||(34151964-34152068)
chr7 (26-130)||(34175056-34175160)
chr7 (28-157)||(40787892-40788020)
chr7 (26-118)||(10065890-10065981)
chr7 (26-130)||(12499175-12499279)
chr7 (26-118)||(12920631-12920722)
chr7 (29-157)||(33979267-33979395)
chr7 (26-158)||(39414955-39415086)
chr7 (26-118)||(46181603-46181694)
chr7 (26-157)||(31455282-31455412)
chr7 (31-118)||(1875557-1875648)
chr7 (28-105)||(11246693-11246770)
chr7 (29-118)||(16278899-16278988)
chr7 (26-118)||(2960312-2960404)
chr7 (26-118)||(5022822-5022913)
chr7 (30-157)||(48558226-48558352)
chr7 (26-116)||(33067117-33067206)
chr7 (26-118)||(9224072-9224164)
chr7 (26-118)||(26299822-26299914)
chr7 (78-118)||(28066852-28066892)
chr7 (26-118)||(30391986-30392078)
[»] chr5 (20 HSPs)
chr5 (32-118)||(15673508-15673594)
chr5 (34-118)||(33346590-33346674)
chr5 (26-157)||(35935806-35935938)
chr5 (28-157)||(34718365-34718493)
chr5 (28-157)||(41692049-41692177)
chr5 (27-157)||(35853952-35854082)
chr5 (28-157)||(19254029-19254157)
chr5 (26-130)||(16187199-16187303)
chr5 (26-118)||(14645700-14645791)
chr5 (28-118)||(6277433-6277522)
chr5 (26-104)||(30775240-30775318)
chr5 (50-118)||(10937842-10937910)
chr5 (26-118)||(14088652-14088743)
chr5 (26-158)||(41616960-41617091)
chr5 (51-158)||(19549817-19549924)
chr5 (43-118)||(25694298-25694372)
chr5 (43-130)||(32302827-32302913)
chr5 (90-120)||(31214-31244)
chr5 (76-118)||(4898392-4898434)
chr5 (28-105)||(6311356-6311433)
[»] chr1 (33 HSPs)
chr1 (34-157)||(40093859-40093982)
chr1 (26-132)||(29425814-29425920)
chr1 (35-133)||(48663162-48663260)
chr1 (28-157)||(4892875-4893003)
chr1 (28-157)||(29185484-29185612)
chr1 (26-99)||(35949160-35949233)
chr1 (38-162)||(7815295-7815418)
chr1 (18-158)||(16176602-16176743)
chr1 (28-157)||(33362478-33362606)
chr1 (31-105)||(19494785-19494859)
chr1 (27-110)||(14106696-14106779)
chr1 (28-118)||(20415364-20415453)
chr1 (31-105)||(31645828-31645902)
chr1 (26-118)||(236898-236989)
chr1 (26-118)||(9222626-9222717)
chr1 (26-158)||(35738551-35738683)
chr1 (26-118)||(44327565-44327656)
chr1 (28-106)||(611106-611183)
chr1 (39-135)||(34321437-34321531)
chr1 (26-158)||(39027154-39027286)
chr1 (26-118)||(47665776-47665868)
chr1 (26-157)||(32133901-32134032)
chr1 (31-118)||(48797043-48797129)
chr1 (28-106)||(19996326-19996403)
chr1 (28-118)||(30490045-30490134)
chr1 (26-118)||(13313118-13313209)
chr1 (26-118)||(27783883-27783974)
chr1 (27-118)||(46772038-46772129)
chr1 (27-105)||(9473390-9473467)
chr1 (76-157)||(28192036-28192117)
chr1 (29-118)||(4051914-4052007)
chr1 (76-116)||(32835147-32835187)
chr1 (43-155)||(48514882-48514994)
[»] chr3 (27 HSPs)
chr3 (18-118)||(26787165-26787265)
chr3 (31-118)||(19455249-19455336)
chr3 (27-152)||(28956435-28956560)
chr3 (49-111)||(33119374-33119436)
chr3 (31-157)||(35688769-35688895)
chr3 (26-118)||(10084846-10084938)
chr3 (26-118)||(10191766-10191858)
chr3 (53-157)||(46819515-46819619)
chr3 (28-110)||(26291373-26291455)
chr3 (31-116)||(8340398-8340482)
chr3 (74-118)||(14418639-14418683)
chr3 (26-118)||(19619065-19619156)
chr3 (49-132)||(30247667-30247749)
chr3 (43-118)||(32995680-32995755)
chr3 (43-158)||(42096329-42096442)
chr3 (53-158)||(41924375-41924480)
chr3 (37-118)||(49193838-49193919)
chr3 (26-118)||(24987044-24987135)
chr3 (26-158)||(38694388-38694520)
chr3 (62-158)||(45078792-45078888)
chr3 (26-118)||(49360331-49360422)
chr3 (77-118)||(35732697-35732738)
chr3 (121-157)||(35498029-35498065)
chr3 (78-118)||(36678693-36678733)
chr3 (26-118)||(39352839-39352930)
chr3 (26-118)||(44792275-44792366)
chr3 (26-118)||(50480706-50480797)
[»] scaffold0230 (1 HSPs)
scaffold0230 (28-157)||(27033-27161)
[»] chr6 (11 HSPs)
chr6 (28-157)||(1221295-1221423)
chr6 (28-157)||(24446702-24446830)
chr6 (47-111)||(10545426-10545490)
chr6 (34-96)||(6336884-6336945)
chr6 (53-157)||(6337602-6337706)
chr6 (26-118)||(9061731-9061823)
chr6 (26-118)||(33328979-33329070)
chr6 (26-118)||(33331991-33332082)
chr6 (26-118)||(31071172-31071263)
chr6 (26-117)||(31783639-31783729)
chr6 (81-157)||(13532530-13532606)
[»] chr2 (17 HSPs)
chr2 (31-118)||(18975202-18975289)
chr2 (27-157)||(4260819-4260949)
chr2 (28-157)||(4290033-4290160)
chr2 (31-157)||(29545575-29545701)
chr2 (29-157)||(40474796-40474924)
chr2 (26-118)||(25425137-25425228)
chr2 (26-118)||(31440277-31440368)
chr2 (47-158)||(12345094-12345205)
chr2 (26-157)||(15162372-15162503)
chr2 (26-118)||(4481437-4481528)
chr2 (26-118)||(29155701-29155792)
chr2 (26-118)||(33867178-33867269)
chr2 (26-157)||(11789042-11789173)
chr2 (76-118)||(8027090-8027132)
chr2 (71-157)||(41935054-41935140)
chr2 (67-159)||(17961054-17961146)
chr2 (43-118)||(10391267-10391341)
[»] chr8 (16 HSPs)
chr8 (28-157)||(20216605-20216733)
chr8 (28-157)||(20236203-20236331)
chr8 (26-99)||(38020600-38020667)
chr8 (27-158)||(15542601-15542731)
chr8 (26-68)||(7583731-7583773)
chr8 (76-118)||(29527833-29527875)
chr8 (26-103)||(38551998-38552075)
chr8 (80-137)||(38552273-38552330)
chr8 (26-118)||(3616503-3616594)
chr8 (26-118)||(24789897-24789988)
chr8 (76-119)||(25419689-25419732)
chr8 (76-119)||(25428029-25428072)
chr8 (76-118)||(7583769-7583811)
chr8 (49-111)||(37226352-37226414)
chr8 (74-116)||(43240040-43240082)
chr8 (28-157)||(26560831-26560959)
[»] scaffold0011 (1 HSPs)
scaffold0011 (38-158)||(250612-250732)
[»] scaffold0242 (2 HSPs)
scaffold0242 (26-118)||(12671-12763)
scaffold0242 (26-118)||(21506-21598)
[»] scaffold0024 (1 HSPs)
scaffold0024 (26-130)||(109586-109690)
[»] scaffold0249 (1 HSPs)
scaffold0249 (74-157)||(20501-20584)
[»] scaffold0164 (2 HSPs)
scaffold0164 (26-118)||(6745-6836)
scaffold0164 (26-118)||(14626-14717)


Alignment Details
Target: chr4 (Bit Score: 176; Significance: 8e-95; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 7262499 - 7262794
Alignment:
Q  18 agtatagcgcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttt 117  Q
    ||||||| |||  ||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||  ||||||||| |||||||||  |||||||    
T  7262499 agtatagtgcctgtacccttttaagtttgcgcataattacccgaacccatgttcatatccatgaaagcgggattttaccctgcccattacgaatattttt 7262598  T
Q  118 tacagatgtccatcgagtttggatctaattgtcatccctaaatgtgtatatcttcaccactaatacccatattatcaatggttgagaattaccattaatc 217  Q
    | | | || |||||   |||| ||||||||| ||||| |||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  7262599 tgcgggtgcccatcagatttgaatctaattgccatcc-taaatgtggatatcttaaccactaatacccatattatcaatggttgagatttaccattaatc 7262697  T
Q  218 tttaccaaattatttcatcaagtgnnnnnnnaatggagagaatcttgatccgattaatatgaattatgtacaataaagttagaaacaaaatccacag 314  Q
    ||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7262698 tttaccaaattatttcatcaagtgtttttttaatggagagaatcttgatccgattaatatgaattatgtacaataaagttagaaacaaaatccacag 7262794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 11035085 - 11035177
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||| |||||||||||||||||||||||||||||| ||||||||  |||||||||||||||| ||||||||||||||||| ||| ||||||||    
T  11035085 gcccgtacccttttaagtttgcgggtaattacccggacccatgcctatatccatgaaagcggggttttaccctacccattgcggatatttttt 11035177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 23349235 - 23349152
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgg 109  Q
    |||| |||||||||||||||||||||||||||||| |||||||| |||| ||| ||||||||||||||||||||||||||||||    
T  23349235 gcccgtacccttttaagtttgcgggtaattacccggacccatgcccatacccacgaaagcggagttttaccctacccattacgg 23349152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 157
Target Start/End: Complemental strand, 31713264 - 31713141
Alignment:
Q  34 ccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtccatcga 133  Q
    |||||||||||||||||||||||| || |||||||| |||| |||||||||||| | ||||||||||||||| || ||| ||||| | |||| |||||||    
T  31713264 ccttttaagtttgcgggtaattactcggacccatgcccatacccatgaaagcggggatttaccctacccattgcgagtaatttttgcggatgcccatcga 31713165  T
Q  134 gtttggatctaattgtcatcccta 157  Q
    |  ||| |||||||| ||||||||    
T  31713164 gcctgggtctaattgccatcccta 31713141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 31 - 157
Target Start/End: Original strand, 22830248 - 22830374
Alignment:
Q  31 tacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtccat 130  Q
    |||||||||||||||||||||||||||||| |||||||| |||| |||||| ||||| | ||||||||||||||| |||||| ||||||| |||  ||||    
T  22830248 tacccttttaagtttgcgggtaattacccggacccatgcccatacccatgatagcggggatttaccctacccattgcgggtaatttttacggatacccat 22830347  T
Q  131 cgagtttggatctaattgtcatcccta 157  Q
    ||    ||| |||||||| ||||||||    
T  22830348 cggacctgggtctaattgccatcccta 22830374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 157
Target Start/End: Complemental strand, 22306403 - 22306277
Alignment:
Q  31 tacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtccat 130  Q
    ||||||||||||||||||||||||||| || || ||||| |||| |||||||||||| | ||||||||||||||| | |||| ||||| | |||  ||||    
T  22306403 tacccttttaagtttgcgggtaattactcggactcatgcccatacccatgaaagcggggatttaccctacccattgcaggtaatttttgcggatacccat 22306304  T
Q  131 cgagtttggatctaattgtcatcccta 157  Q
    || |  ||| |||||||||||||||||    
T  22306303 cgggcctgggtctaattgtcatcccta 22306277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 28 - 157
Target Start/End: Original strand, 53141018 - 53141146
Alignment:
Q  28 ccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtc 127  Q
    |||||||| || || ||||||||||||||||| | ||| ||| ||||||||||||||||| |||||||||||||||||  ||||||||||| | | | ||    
T  53141018 ccatacccattaaaatttgcgggtaattacccta-cccgtgcccatatccatgaaagcggggttttaccctacccattgtgggtattttttgcgggtatc 53141116  T
Q  128 catcgagtttggatctaattgtcatcccta 157  Q
    |||||||| ||| || ||||| ||||||||    
T  53141117 catcgagtctgggtccaattgccatcccta 53141146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 26 - 157
Target Start/End: Complemental strand, 52801929 - 52801799
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatg 125  Q
    |||||||||| || || ||||||||||||||||| | ||| ||| ||||||||| ||||||| |||||||||||||||||  ||||||||||| | | |     
T  52801929 gcccatacccattaaaatttgcgggtaattacccta-cccgtgcccatatccataaaagcggggttttaccctacccattgtgggtattttttgcgggta 52801831  T
Q  126 tccatcgagtttggatctaattgtcatcccta 157  Q
    |||||||||| ||| || ||||| ||||||||    
T  52801830 tccatcgagtctgggtccaattgccatcccta 52801799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 26 - 158
Target Start/End: Complemental strand, 52180491 - 52180360
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatg 125  Q
    |||||||||| ||||| |||| ||||| ||||||| |||||||| || |||||| ||||||| |||||||||||||||||  ||||||||||| | | |     
T  52180491 gcccatacccatttaattttgtgggta-ttacccgtacccatgcccagatccataaaagcggggttttaccctacccattgtgggtattttttgcgggta 52180393  T
Q  126 tccatcgagtttggatctaattgtcatccctaa 158  Q
    ||||| | || ||| || |||||||||||||||    
T  52180392 tccattgggtctgggtccaattgtcatccctaa 52180360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 44810123 - 44810214
Alignment:
Q  27 cccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    ||||||||| | ||| ||||| |||||||||||| ||||| |||||||| ||| ||||| | |||||||||||||||||||  |||||||||    
T  44810123 cccatacccgtctaaatttgctggtaattacccggacccaagctcatattcataaaagcagggttttaccctacccattacaagtatttttt 44810214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 157
Target Start/End: Complemental strand, 8589508 - 8589414
Alignment:
Q  63 cccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtccatcgagtttggatctaattgtcatcccta 157  Q
    ||||||| |||||| |||||||||| ||||||||||||||||| ||| |||||||| | | |||||||||||  ||| |||||||| || |||||    
T  8589508 cccatgcccatatctatgaaagcggggttttaccctacccattgcggctattttttgcgggtgtccatcgagcctgggtctaattgccaccccta 8589414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 31 - 120
Target Start/End: Complemental strand, 27790763 - 27790674
Alignment:
Q  31 tacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttac 120  Q
    ||||||||||||||||| | ||||||||||||| ||||| ||   | ||||||| | |||||||||||||||||| || |||||||||||    
T  27790763 tacccttttaagtttgcagataattacccgaactcatgcccagtccaatgaaagtgaagttttaccctacccattgcgagtattttttac 27790674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 26 - 163
Target Start/End: Original strand, 42755734 - 42755870
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatg 125  Q
    |||||||||| ||||| |||| ||||| ||||||| |||| ||| || |||||| ||||||| |||||||||||||||||  ||||||||||| | | |     
T  42755734 gcccatacccatttaattttgtgggta-ttacccgtacccgtgcccagatccataaaagcggggttttaccctacccattgtgggtattttttgcgggta 42755832  T
Q  126 tccatcgagtttggatctaattgtcatccctaaatgtg 163  Q
    ||||| |  | ||| |||||||| ||||||||| ||||    
T  42755833 tccattggatctgggtctaattgccatccctaattgtg 42755870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 132
Target Start/End: Original strand, 9930930 - 9931018
Alignment:
Q  44 ttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtccatcg 132  Q
    ||||||||||||||||| || || || |||| | || ||||||| ||||||||||||||||| ||| |||||||| | |||||||||||    
T  9930930 ttgcgggtaattacccggacacaagcccatacctataaaagcggggttttaccctacccattgcggatattttttgcggatgtccatcg 9931018  T

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Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 50981322 - 50981238
Alignment:
Q  27 cccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggt 111  Q
    |||||||||  |||| |||  |||||||||||||||||||  |||||||||| |||| ||| ||||||||||||||||| |||||    
T  50981322 cccatacccgcttaaatttatgggtaattacccgaacccaaactcatatccaagaaaacggggttttaccctacccattgcgggt 50981238  T

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Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 51806547 - 51806459
Alignment:
Q  44 ttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtccatcg 132  Q
    ||||||||||||| ||| ||||| || |||| |||| |||| || |||||||||||| ||||||||||||||||| ||| || ||||||    
T  51806547 ttgcgggtaattatccggacccaagcccatacccataaaagtggggttttaccctactcattacgggtattttttgcaggtgcccatcg 51806459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 118
Target Start/End: Complemental strand, 29405567 - 29405493
Alignment:
Q  43 tttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    ||||||||||||||||| | ||| ||| |||| ||||||||||||||||||| |||||| |||| |||||||||||    
T  29405567 tttgcgggtaattacccta-cccgtgcccatacccatgaaagcggagttttatcctaccaattatgggtatttttt 29405493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 43 - 157
Target Start/End: Original strand, 46081140 - 46081253
Alignment:
Q  43 tttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtccatcgagtttggatc 142  Q
    |||||| |||||||||| | ||| ||| |||| |||||||||||| |||||||||||||||||  || |||||||| | ||||  |||||| | ||| ||    
T  46081140 tttgcgcgtaattacccta-cccgtgcccatacccatgaaagcggggttttaccctacccattgtggatattttttgcggatgctcatcgaatctgggtc 46081238  T
Q  143 taattgtcatcccta 157  Q
     ||||||||||||||    
T  46081239 caattgtcatcccta 46081253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 119
Target Start/End: Original strand, 25938750 - 25938842
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttta 119  Q
    |||||||||| ||||| |||| ||||| ||||||| |||| ||  || | |||| |||||||||||||||||||||||||  ||||||||||||    
T  25938750 gcccatacccatttaattttgtgggta-ttacccgtacccgtgtccagacccataaaagcggagttttaccctacccattgtgggtatttttta 25938842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 157
Target Start/End: Original strand, 45097969 - 45098096
Alignment:
Q  28 ccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtc 127  Q
    |||||||| || || ||||||||||||||||| | ||| | | |||| | || ||||||||||||||||||||| |||  ||||||||||| ||| ||||    
T  45097969 ccatacccattaaaatttgcgggtaattacccta-cccgtcc-catacctataaaagcggagttttaccctacctattgtgggtattttttgcaggtgtc 45098066  T
Q  128 catcgagtttggatctaattgtcatcccta 157  Q
    ||||  || ||| || ||||||||||||||    
T  45098067 catcaggtctgggtccaattgtcatcccta 45098096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 1757702 - 1757622
Alignment:
Q  77 catgaaagcggagttttaccctacccattacgggtattttttacagatgtccatcgagtttggatctaattgtcatcccta 157  Q
    ||||||||||| |||||||||||||||||| ||||||||||| ||| | ||||| | || ||| || ||||| ||||||||    
T  1757702 catgaaagcggggttttaccctacccattatgggtattttttgcaggtatccattgggtctgggtccaattgccatcccta 1757622  T

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Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 26337329 - 26337237
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| | ||| |||||||||||||||||  ||||| || |  | |||||||||| | ||||||||||||||||  ||||||||||||    
T  26337329 gcccatacccatataaatttgcgggtaattacccatacccaagcccggacccatgaaagcagggttttaccctacccatagcgggtatttttt 26337237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 28233842 - 28233750
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| | ||| |||||||||||||| ||  ||||| || |  | |||||||||||| ||||||||||||||||  ||||||||||||    
T  28233842 gcccatacccatataaatttgcgggtaattatccatacccaagcccggacccatgaaagcggggttttaccctacccatagcgggtatttttt 28233750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 29148733 - 29148642
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| ||||| |||| ||||| ||||||| |||| ||| || | |||| ||||||| |||||||||||||||||  |||||||||||    
T  29148733 gcccatacccatttaattttgtgggta-ttacccgtacccgtgcccagacccataaaagcggggttttaccctacccattgtgggtatttttt 29148642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 32655236 - 32655145
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| ||||| |||| ||||| ||||||| |||| ||| || |||||| ||||||| ||||||||||| |||||  |||||||||||    
T  32655236 gcccatacccatttaattttgtgggta-ttacccgtacccgtgcccagatccataaaagcggggttttaccctatccattgtgggtatttttt 32655145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 42052984 - 42052893
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| ||||| |||| ||||| ||||||| |||| ||| || | |||| ||||||| |||||||||||||||||  |||||||||||    
T  42052984 gcccatacccatttaattttgtgggta-ttacccgtacccgtgcccagacccataaaagcggggttttaccctacccattgtgggtatttttt 42052893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 157
Target Start/End: Original strand, 39804700 - 39804831
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatg 125  Q
    |||||||||| | ||| |||||||||||||||||  ||||| || || | |||| ||||||  |||||| |||||||||  |||||||||||| | | ||    
T  39804700 gcccatacccatataaatttgcgggtaattacccatacccaagcccagacccataaaagcgaggttttatcctacccatagcgggtattttttgcgggtg 39804799  T
Q  126 tccatcgagtttggatctaattgtcatcccta 157  Q
     |||| | || ||| || ||||||||||||||    
T  39804800 cccatagggtctgggtccaattgtcatcccta 39804831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 23147798 - 23147889
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| ||||| |||| ||||| ||||||| |||| |||  | |||||| ||||||| |||||||||||||||||  || ||||||||    
T  23147798 gcccatacccatttaattttgtgggta-ttacccgtacccgtgcctagatccataaaagcggggttttaccctacccattgtggatatttttt 23147889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 38000989 - 38001080
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    ||||||| || ||||| |||| ||||| ||||||| |||| ||| |||| |||| ||| ||| ||||||||||||||||||  ||||||||||    
T  38000989 gcccatatccatttaattttgtgggta-ttacccgtacccgtgcccatacccataaaaacggggttttaccctacccattataggtatttttt 38001080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 1730742 - 1730680
Alignment:
Q  53 attacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttt 116  Q
    ||||||||||||| | |||| |||||||| ||||| |||||||||||||||||  |||||||||    
T  1730742 attacccgaacccgt-ctcagatccatgatagcggggttttaccctacccattgtgggtatttt 1730680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 122
Target Start/End: Original strand, 24487039 - 24487133
Alignment:
Q  27 cccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacag 122  Q
    ||||||||| | ||| |||||||||||||| ||  ||||| || ||||  ||| ||||||  || ||||||||||||||| |||||||||||||||    
T  24487039 cccatacccatctaaatttgcgggtaattatccagacccaagcccatacacat-aaagcgaggtattaccctacccattatgggtattttttacag 24487133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 21076219 - 21076310
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| ||||| |||| ||||| ||||||| |||| ||| || | |||| ||||||| ||||||||||| |||||  || ||||||||    
T  21076219 gcccatacccatttaattttgtgggta-ttacccgtacccgtgcccagacccataaaagcggggttttaccctatccattgtggatatttttt 21076310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 104
Target Start/End: Complemental strand, 56444765 - 56444737
Alignment:
Q  76 ccatgaaagcggagttttaccctacccat 104  Q
    |||||||||||||||||||||||||||||    
T  56444765 ccatgaaagcggagttttaccctacccat 56444737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 31 - 131
Target Start/End: Original strand, 36073113 - 36073213
Alignment:
Q  31 tacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtccat 130  Q
    ||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||| | |||| ||||    
T  36073113 tacccttttaaatttgcgggtaattacccgaatccatgcccatatccatgaaagcggggttttaccctacccattacgggtattttttgcggatgcccat 36073212  T
Q  131 c 131  Q
    |    
T  36073213 c 36073213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 31 - 161
Target Start/End: Original strand, 45116259 - 45116389
Alignment:
Q  31 tacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtccat 130  Q
    |||||||||||||| ||||||||||||||| |||||| | ||||||||||||||||| ||||||||||| ||||| |||||||||||||| | || ||||    
T  45116259 tacccttttaagttggcgggtaattacccggacccatacccatatccatgaaagcggggttttaccctatccattgcgggtattttttacgggtgcccat 45116358  T
Q  131 cgagtttggatctaattgtcatccctaaatg 161  Q
    |  |  ||| |||||||||||||||||||||    
T  45116359 caggcctgggtctaattgtcatccctaaatg 45116389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 40855612 - 40855504
Alignment:
Q  39 taagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtccatcgagtttg 138  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||| ||||||||  ||||||||||||| |||| ||||| | | ||    
T  40855612 taagtttgcgggtaattacccgaacccatgcccatatctatgaaagcgg-gttttaccttacccattgtgggtattttttacggatgcccatcaaatctg 40855514  T
Q  139 gatctaattg 148  Q
    ||||||||||    
T  40855513 gatctaattg 40855504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 157
Target Start/End: Original strand, 25047355 - 25047472
Alignment:
Q  40 aagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtccatcgagtttgg 139  Q
    ||||||||||||||||||| | || ||||| ||||||||||||||||||||||||||||||||||| | |||||||||| | | || |||| | |  |||    
T  25047355 aagtttgcgggtaattacctggactcatgcccatatccatgaaagcggagttttaccctacccattgcaggtattttttgcgggtgcccattgggcctgg 25047454  T
Q  140 atctaattgtcatcccta 157  Q
    ||||||| ||||||||||    
T  25047455 atctaatcgtcatcccta 25047472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 158
Target Start/End: Complemental strand, 40341923 - 40341796
Alignment:
Q  31 tacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtccat 130  Q
    |||||||||||||||||||||||||||||| ||| |||| |||| ||||||||| |||| ||||||||||||||| || ||| ||||||| |||  | ||    
T  40341923 tacccttttaagtttgcgggtaattacccggacctatgcccatacccatgaaagtggagatttaccctacccattgcgtgtaatttttacggataccgat 40341824  T
Q  131 cgagtttggatctaattgtcatccctaa 158  Q
    || |  ||| |||||||| |||||||||    
T  40341823 cgggcctgggtctaattgccatccctaa 40341796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 28 - 157
Target Start/End: Complemental strand, 17171929 - 17171801
Alignment:
Q  28 ccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtc 127  Q
    |||||||| || || ||||||||||||||||| | ||| ||| ||||||||||||||||| |||||||||||||||||  ||||||||||| | | | ||    
T  17171929 ccatacccattaaaatttgcgggtaattacccta-cccgtgcccatatccatgaaagcggggttttaccctacccattgtgggtattttttgcgggtatc 17171831  T
Q  128 catcgagtttggatctaattgtcatcccta 157  Q
    |||||||| ||| || ||||| ||||||||    
T  17171830 catcgagtctgggtccaattgccatcccta 17171801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 157
Target Start/End: Original strand, 44301117 - 44301245
Alignment:
Q  28 ccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtc 127  Q
    |||||||| || || ||||||||||||||||| | ||||||| |||| ||||||||| || |||||||||||||||||  ||||||||||| ||| || |    
T  44301117 ccatacccattaaaatttgcgggtaattacccta-cccatgcccatacccatgaaagtggggttttaccctacccattgtgggtattttttgcaggtgcc 44301215  T
Q  128 catcgagtttggatctaattgtcatcccta 157  Q
    ||||| || ||| || ||||| ||||||||    
T  44301216 catcgggtctgggtccaattgccatcccta 44301245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 163
Target Start/End: Complemental strand, 3551265 - 3551129
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatg 125  Q
    |||||||||| ||||| |||||||||| ||||||  |||| ||| || | |||||||||||| |||||||||||||||||  ||||||||||| ||| |     
T  3551265 gcccatacccatttaaatttgcgggta-ttacccagacccgtgcccaaacccatgaaagcggggttttaccctacccattgtgggtattttttgcaggta 3551167  T
Q  126 tccatcgagtttggatctaattgtcatccctaaatgtg 163  Q
     |||||| |  ||| || ||||||||||||||| ||||    
T  3551166 cccatcgggcctgggtccaattgtcatccctaattgtg 3551129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 156
Target Start/End: Complemental strand, 25309240 - 25309112
Alignment:
Q  27 cccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgt 126  Q
    ||||||||| ||||| |||||||||||| ||||  |||||  | |||| |||||||||||| ||||||| |||||||||  ||||||||||||| |||      
T  25309240 cccatacccatttaaatttgcgggtaat-acccagacccaaacccatacccatgaaagcggggttttactctacccattgtgggtattttttacggatac 25309142  T
Q  127 ccatcgagtttggatctaattgtcatccct 156  Q
    |||||||| |||| || ||||| |||||||    
T  25309141 ccatcgagcttgggtccaattgccatccct 25309112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 26 - 161
Target Start/End: Original strand, 16567957 - 16568091
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatg 125  Q
    |||||||||| ||||| |||| ||||| ||||||| |||| ||| || | |||| ||||||| |||||||||||||||||  ||||||||||| ||| |     
T  16567957 gcccatacccatttaattttgtgggta-ttacccgtacccgtgcccagacccataaaagcggggttttaccctacccattgtgggtattttttgcaggta 16568055  T
Q  126 tccatcgagtttggatctaattgtcatccctaaatg 161  Q
    ||||| | || ||| || ||||| ||||||||||||    
T  16568056 tccattgggtctgggtccaattgccatccctaaatg 16568091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 26 - 161
Target Start/End: Complemental strand, 16597705 - 16597571
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatg 125  Q
    |||||||||| ||||| |||| ||||| ||||||| |||| ||| || | |||| ||||||| |||||||||||||||||  ||||||||||| ||| |     
T  16597705 gcccatacccatttaattttgtgggta-ttacccgtacccgtgcccagacccataaaagcggggttttaccctacccattgtgggtattttttgcaggta 16597607  T
Q  126 tccatcgagtttggatctaattgtcatccctaaatg 161  Q
    ||||| | || ||| || ||||| ||||||||||||    
T  16597606 tccattgggtctgggtccaattgccatccctaaatg 16597571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 130
Target Start/End: Complemental strand, 34152068 - 34151964
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatg 125  Q
    |||||||||| | ||| ||||| |||||||||||  ||||| ||    ||||||||||||||  ||||||||||||||| ||||||||||||| | ||||    
T  34152068 gcccatacccatataaatttgcaggtaattacccatacccaagccgggatccatgaaagcgggattttaccctacccataacgggtattttttgcggatg 34151969  T
Q  126 tccat 130  Q
    |||||    
T  34151968 tccat 34151964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 130
Target Start/End: Original strand, 34175056 - 34175160
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatg 125  Q
    |||||||||| | ||| ||||| |||||||||||  ||||| ||    ||||||||||||||  ||||||||||||||| ||||||||||||| | ||||    
T  34175056 gcccatacccatataaatttgcaggtaattacccatacccaagccgggatccatgaaagcgggattttaccctacccataacgggtattttttgcggatg 34175155  T
Q  126 tccat 130  Q
    |||||    
T  34175156 tccat 34175160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 157
Target Start/End: Complemental strand, 40788020 - 40787892
Alignment:
Q  28 ccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtc 127  Q
    |||||||| || || ||||| ||||||||||| | ||| ||  |||| |||||||||||| |||||||||||||||||  ||||||||||| | | || |    
T  40788020 ccatacccattaaaatttgctggtaattacccta-cccgtgtccatacccatgaaagcggggttttaccctacccattgtgggtattttttgcgggtgcc 40787922  T
Q  128 catcgagtttggatctaattgtcatcccta 157  Q
    ||||| || ||  || ||||||||||||||    
T  40787921 catcgggtctgagtccaattgtcatcccta 40787892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 10065981 - 10065890
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| ||| | |||| ||||| ||||||| |||| ||| || | |||||||||||| |||||||||||||||||  |||||||||||    
T  10065981 gcccatacccattttattttgtgggta-ttacccgcacccgtgcccagacccatgaaagcggggttttaccctacccattgtgggtatttttt 10065890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 130
Target Start/End: Complemental strand, 12499279 - 12499175
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatg 125  Q
    |||||||||| |  || |||||||||||||||||  ||||| || || | ||||||||||||  ||||||| |||||||  |||||||||||| ||| ||    
T  12499279 gcccatacccatacaaatttgcgggtaattacccatacccaagcccagacccatgaaagcgggattttaccatacccatagcgggtattttttgcaggtg 12499180  T
Q  126 tccat 130  Q
    |||||    
T  12499179 tccat 12499175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 12920722 - 12920631
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||| | ||||| |||| ||||| ||||||| |||| ||| || |||||| ||||||| |||||||||||||||||  |||||||||||    
T  12920722 gcccatactcatttaattttgtgggta-ttacccgtacccgtgcccagatccataaaagcggggttttaccctacccattgtgggtatttttt 12920631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 29 - 157
Target Start/End: Original strand, 33979267 - 33979395
Alignment:
Q  29 catacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtcc 128  Q
    ||||||| | ||| |||||||||||||||||  ||||| || |  |||||||||||||  |||||||||||||||   |||||||||||| ||| || ||    
T  33979267 catacccatataaatttgcgggtaattacccatacccaagcccggatccatgaaagcgtggttttaccctacccaaagcgggtattttttgcaggtgccc 33979366  T
Q  129 atcgagtttggatctaattgtcatcccta 157  Q
    || | || ||| || ||||| ||||||||    
T  33979367 atagggtctgggtccaattgccatcccta 33979395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 158
Target Start/End: Original strand, 39414955 - 39415086
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatg 125  Q
    |||||||||| ||||| |||| || || ||||||| |||| |||||| | |||| ||||||| ||||||| |||||||||  ||||||||||| | | |     
T  39414955 gcccatacccatttaattttgtggata-ttacccgtacccgtgctcagacccataaaagcggggttttacgctacccattgtgggtattttttgcgggta 39415053  T
Q  126 tccatcgagtttggatctaattgtcatccctaa 158  Q
    ||||| | || ||| |||||||| |||||||||    
T  39415054 tccattgggtctgggtctaattgccatccctaa 39415086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 46181603 - 46181694
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| ||||| |||| ||||| ||||||| |||| ||| || | |||| ||||||| |||||||||||||||||  |||||||||||    
T  46181603 gcccatacccatttaattttgtgggta-ttacccgtacccgtgcccagacccataaaagcggggttttaccctacccattgtgggtatttttt 46181694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 157
Target Start/End: Original strand, 31455282 - 31455412
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatg 125  Q
    |||||||||| ||||| |||| ||||| ||||||| |||| ||| || |||||| ||||||  |||||||||||| ||||  ||||||||||| | | |     
T  31455282 gcccatacccatttaattttgtgggta-ttacccgtacccgtgcccagatccataaaagcgaggttttaccctactcattgtgggtattttttgcgggta 31455380  T
Q  126 tccatcgagtttggatctaattgtcatcccta 157  Q
    ||||| | || ||| || ||||||||||||||    
T  31455381 tccattgggtctgggtccaattgtcatcccta 31455412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 118
Target Start/End: Complemental strand, 1875648 - 1875557
Alignment:
Q  31 tacccttttaagtttgcgggtaattacccgaacccatgctcatatcc----atgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||||||||||||| ||||||| | ||||||||||||| ||    |||||||||| | ||||||||| ||||| ||| || |||||    
T  1875648 tacccttttaagtttgcgggcaattacctggacccatgctcatacccatatatgaaagcggggatttaccctatccattgcggttaattttt 1875557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 11246693 - 11246770
Alignment:
Q  28 ccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccatt 105  Q
    ||||||||  |||| |||||||||||| ||||  ||||| ||||||| ||||||||| || ||||||| |||||||||    
T  11246693 ccatacccacttaaatttgcgggtaatcacccagacccaagctcatacccatgaaagtggggttttactctacccatt 11246770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 118
Target Start/End: Original strand, 16278899 - 16278988
Alignment:
Q  29 catacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    ||||||| | ||| |||||||||||||||||  ||| | || |||| || | ||||||| ||||||||||||||||| | ||||||||||    
T  16278899 catacccatctaaatttgcgggtaattacccagaccaaggcccatacccgtaaaagcggggttttaccctacccattgcaggtatttttt 16278988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 2960312 - 2960404
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| || || ||||| |||||||||||  ||||| |  ||||||||| ||||| | ||||||||||| ||||  ||||||||||||    
T  2960312 gcccatacccattcaaatttgcaggtaattacccatacccaagtccatatccattaaagcagggttttaccctatccatagcgggtatttttt 2960404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 5022913 - 5022822
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    ||||||| || ||||| |||| ||||| ||||||| |||| ||| || | |||| ||||||| |||||||||||||||||  |||||||||||    
T  5022913 gcccatatccatttaattttgtgggta-ttacccgtacccgtgcccagacccataaaagcggggttttaccctacccattgtgggtatttttt 5022822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 157
Target Start/End: Complemental strand, 48558352 - 48558226
Alignment:
Q  30 atacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtcca 129  Q
    |||||| ||||| |||||||||||||||||  |||||||| | || ||| |||||||| |||||| |||| ||||  ||| |||||||| | | || |||    
T  48558352 atacccatttaaatttgcgggtaattacccatacccatgcccgtacccaagaaagcggggtttta-cctatccatagcggatattttttgcgggtgccca 48558254  T
Q  130 tcgagtttggatctaattgtcatcccta 157  Q
    | |||| ||| || ||||| ||||||||    
T  48558253 ttgagtctgggtccaattgccatcccta 48558226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 116
Target Start/End: Complemental strand, 33067206 - 33067117
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttt 116  Q
    ||||||| || ||||| |||| ||||| ||||||| |||| | |||| | |||||| || || |||||||||||||||||| |||||||||    
T  33067206 gcccatatccatttaaatttgtgggta-ttacccggacccgtcctcagacccatgatagaggggttttaccctacccattatgggtatttt 33067117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 9224072 - 9224164
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| | ||| |||||||||||||| ||  ||||| || |  | |||| ||||||| ||||||||||||||||  ||| ||||||||    
T  9224072 gcccatacccatataaatttgcgggtaattatccatacccaagcccgaacccataaaagcggggttttaccctacccatagcggatatttttt 9224164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 26299822 - 26299914
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| |  || |||||||||||||||||  ||||| || |  | ||||||||| || |||||| |||||||||  ||||||||||||    
T  26299822 gcccatacccatacaaatttgcgggtaattacccatacccaagcccgaacccatgaaagtggggttttatcctacccatagcgggtatttttt 26299914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 28066892 - 28066852
Alignment:
Q  78 atgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| ||||||||||||||||  ||||||||||||    
T  28066892 atgaaagcggggttttaccctacccatagcgggtatttttt 28066852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 30391986 - 30392078
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||| | || || ||||| |||||||||||  |||||||  | |||||| |||| ||| |||||||||||||| |  ||||||||||||    
T  30391986 gcccatactcattcaaatttgcaggtaattacccatacccatgtccgtatccaagaaaacggggttttaccctacccgtagcgggtatttttt 30392078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 15673594 - 15673508
Alignment:
Q  32 acccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||| ||||||||||||||||| ||||||||||||    
T  15673594 acccttttaagtttgcgggtaattacccggacccatgcccatatccattaaagcggggttttaccctacccattgcgggtatttttt 15673508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 34 - 118
Target Start/End: Complemental strand, 33346674 - 33346590
Alignment:
Q  34 ccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||| ||| | ||| ||||||||||||    
T  33346674 ccttttaagtttgcgggtaattacccgaacccatgcccatatccatgaaagcgggattttacgctatctattgcgggtatttttt 33346590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 26 - 157
Target Start/End: Original strand, 35935806 - 35935938
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaa-cccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagat 124  Q
    |||| ||||||||||||||||||||||||||||||   ||||||| ||||||||||||||| || |||||||||| ||||| |  |||||||||   |||    
T  35935806 gcccgtacccttttaagtttgcgggtaattacccggggcccatgcccatatccatgaaagctgaattttaccctatccattgcaagtattttttgtggat 35935905  T
Q  125 gtccatcgagtttggatctaattgtcatcccta 157  Q
    |||||||||   || ||||||||||||||||||    
T  35935906 gtccatcgaacctgaatctaattgtcatcccta 35935938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 28 - 157
Target Start/End: Complemental strand, 34718493 - 34718365
Alignment:
Q  28 ccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtc 127  Q
    |||||||| || || ||||||||||||||||| | ||| ||| ||||||||||||||||| |||||||||||||||||  ||||||||||| | | | ||    
T  34718493 ccatacccattaaaatttgcgggtaattacccta-cccgtgcccatatccatgaaagcggggttttaccctacccattgtgggtattttttgcgggtatc 34718395  T
Q  128 catcgagtttggatctaattgtcatcccta 157  Q
    |||||||| ||| || ||||| ||||||||    
T  34718394 catcgagtctgggtccaattgccatcccta 34718365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 28 - 157
Target Start/End: Complemental strand, 41692177 - 41692049
Alignment:
Q  28 ccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtc 127  Q
    |||||||| || || ||||||||||||||||| | ||| ||| ||||||||||||||||| |||||||||||||||||  ||||||||||| | | | ||    
T  41692177 ccatacccattaaaatttgcgggtaattacccta-cccgtgcccatatccatgaaagcggggttttaccctacccattgtgggtattttttgcgggtatc 41692079  T
Q  128 catcgagtttggatctaattgtcatcccta 157  Q
    |||||||| ||| || ||||| ||||||||    
T  41692078 catcgagtctgggtccaattgccatcccta 41692049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 27 - 157
Target Start/End: Original strand, 35853952 - 35854082
Alignment:
Q  27 cccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgt 126  Q
    ||||||||| | ||| |||||||||||||||||  ||||| || |  |||||||||| ||| |||||||||||||||| ||||||||||||||| | ||     
T  35853952 cccatacccatataaatttgcgggtaattacccatacccaagcccggatccatgaaaacggggttttaccctacccataacgggtattttttacgggtgc 35854051  T
Q  127 ccatcgagtttggatctaattgtcatcccta 157  Q
    |||| |  | ||| |||||||| ||||||||    
T  35854052 ccataggatctgggtctaattgccatcccta 35854082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 157
Target Start/End: Complemental strand, 19254157 - 19254029
Alignment:
Q  28 ccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtc 127  Q
    |||||||| || || ||||||||||||||||| | ||| | | |||| |||||||||||| |||||||||||||||||  ||||||||||| | | || |    
T  19254157 ccatacccattaaaatttgcgggtaattacccta-cccgtacccatacccatgaaagcggggttttaccctacccattgtgggtattttttgctggtgcc 19254059  T
Q  128 catcgagtttggatctaattgtcatcccta 157  Q
    ||||| || ||| || ||||||||||||||    
T  19254058 catcgggtctgggtccaattgtcatcccta 19254029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 130
Target Start/End: Original strand, 16187199 - 16187303
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatg 125  Q
    |||||||||| ||||| |||||||||||||||||  |||||  | |  |||||||||||||||||||||||||||||||  | | |||||||| ||| ||    
T  16187199 gcccatacccatttaaatttgcgggtaattacccatacccaaaccctgatccatgaaagcggagttttaccctacccatagcagatattttttgcaggtg 16187298  T
Q  126 tccat 130  Q
    |||||    
T  16187299 tccat 16187303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 14645700 - 14645791
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    ||||||| || ||||| |||| ||||| ||||||| |||| ||| || |||||| ||||||| |||||||||||||||||  |||||||||||    
T  14645700 gcccatatccatttaattttgtgggta-ttacccgtacccgtgcccagatccataaaagcggggttttaccctacccattgtgggtatttttt 14645791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 118
Target Start/End: Complemental strand, 6277522 - 6277433
Alignment:
Q  28 ccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||| || || ||| |||||||| |||| | ||| ||| |||| |||||||||||| |||||||||||||||||  |||||||||||    
T  6277522 ccatacccattaaaatttacgggtaataacccta-cccgtgcccatacccatgaaagcggggttttaccctacccattgtgggtatttttt 6277433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 30775240 - 30775318
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccat 104  Q
    |||||||||| | ||| |||||||||||||||||  ||||| |  |  ||| |||||||||||||||||||||||||||    
T  30775240 gcccatacccatataaatttgcgggtaattacccatacccaagtccggatctatgaaagcggagttttaccctacccat 30775318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 10937842 - 10937910
Alignment:
Q  50 gtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    ||||||||||| ||||| || |||| |||| ||||||| ||||||||||||| |||  |||||||||||    
T  10937842 gtaattacccggacccaagcccatacccataaaagcggggttttaccctacctattgtgggtatttttt 10937910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 14088652 - 14088743
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| ||||| |||| ||||| ||||||| |||| ||| || | |||| ||||||| |||||||||||||||||  ||| |||||||    
T  14088652 gcccatacccatttaattttgtgggta-ttacccgtacccgtgcccagacccataaaagcggggttttaccctacccattgtgggcatttttt 14088743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 158
Target Start/End: Original strand, 41616960 - 41617091
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatg 125  Q
    |||||||||| ||||| |||||| ||| ||||||| |||| ||  || | |||| ||||||| |||||| ||||||||||  ||||||||||| | | |     
T  41616960 gcccatacccatttaattttgcgagta-ttacccgtacccgtgaccagacccataaaagcggggttttatcctacccattgtgggtattttttgcgggta 41617058  T
Q  126 tccatcgagtttggatctaattgtcatccctaa 158  Q
    ||||| | || |||||| ||||| |||||||||    
T  41617059 tccattgggtctggatccaattgccatccctaa 41617091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 19549817 - 19549924
Alignment:
Q  51 taattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtccatcgagtttggatctaattgtc 150  Q
    ||||||||  |||||| || |||| ||| |||| ||| ||| |||| |||||||||||| |||||||| | | | ||||||||   |||||| |||||||    
T  19549817 taattacctaaacccaagcccatacccacgaaatcggggttgtaccatacccattacggatattttttgcgggtatccatcgaacctggatccaattgtc 19549916  T
Q  151 atccctaa 158  Q
    ||||||||    
T  19549917 atccctaa 19549924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 118
Target Start/End: Complemental strand, 25694372 - 25694298
Alignment:
Q  43 tttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    ||||||||||||||||| | ||  ||| |||| |||||||||||| |||||| ||||||||||  |||||||||||    
T  25694372 tttgcgggtaattacccta-cctgtgcccatacccatgaaagcggggttttatcctacccattgtgggtatttttt 25694298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 130
Target Start/End: Original strand, 32302827 - 32302913
Alignment:
Q  43 tttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtccat 130  Q
    |||||||||||||||||  ||||| || |  | |||||||||||| |||||||| |||||||   ||||||||||||||| |||||||    
T  32302827 tttgcgggtaattacccatacccaagcccggacccatgaaagcggggttttacc-tacccatagtgggtattttttacaggtgtccat 32302913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 120
Target Start/End: Original strand, 31214 - 31244
Alignment:
Q  90 ttttaccctacccattacgggtattttttac 120  Q
    |||||||||||||||||||||||||||||||    
T  31214 ttttaccctacccattacgggtattttttac 31244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 4898434 - 4898392
Alignment:
Q  76 ccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||||| ||||||||||||||||| ||||| ||||||    
T  4898434 ccatgaaagcggggttttaccctacccattgcgggtttttttt 4898392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 6311356 - 6311433
Alignment:
Q  28 ccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccatt 105  Q
    |||||||| ||||| |||| ||||||||||    |||| ||| || | |||||||||||| |||||||||||||||||    
T  6311356 ccatacccatttaaatttgtgggtaattacatagacccgtgcacaaacccatgaaagcggggttttaccctacccatt 6311433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 157
Target Start/End: Complemental strand, 40093982 - 40093859
Alignment:
Q  34 ccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtccatcga 133  Q
    |||||||||||||||| ||||||||||||||||||| |||| |||||||||||| | ||||||||||||||| |||||| ||||| | ||| |||||||     
T  40093982 ccttttaagtttgcggataattacccgaacccatgcccatacccatgaaagcggggatttaccctacccattgcgggtaatttttgcggatatccatcgg 40093883  T
Q  134 gtttggatctaattgtcatcccta 157  Q
    |  ||| |||||| | ||||||||    
T  40093882 gcctgggtctaatggccatcccta 40093859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 26 - 132
Target Start/End: Complemental strand, 29425920 - 29425814
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatg 125  Q
    |||| ||||||||||||||||| |||||||||||| | |||||| |||||| |||||||||| ||||||||||| ||||| |||||||||||| | | ||    
T  29425920 gcccgtacccttttaagtttgcaggtaattacccggagccatgcccatatctatgaaagcggggttttaccctatccattgcgggtattttttgcgggtg 29425821  T
Q  126 tccatcg 132  Q
    |||||||    
T  29425820 tccatcg 29425814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 133
Target Start/End: Original strand, 48663162 - 48663260
Alignment:
Q  35 cttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtccatcga 133  Q
    |||||||||||||||||||||||||| |||||||| |||| |||| ||||||| | ||||||| ||||||| |||||| ||||| |||||| |||||||    
T  48663162 cttttaagtttgcgggtaattacccggacccatgcccatacccataaaagcggggatttacccgacccattgcgggtaatttttgcagatgcccatcga 48663260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 28 - 157
Target Start/End: Complemental strand, 4893003 - 4892875
Alignment:
Q  28 ccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtc 127  Q
    |||||||| || || ||||||||||||||||| | ||| ||| ||||||||||||||||| |||||||||||||||||  ||||||||||| | | | ||    
T  4893003 ccatacccattaaaatttgcgggtaattacccta-cccgtgcccatatccatgaaagcggggttttaccctacccattgtgggtattttttgcgggtatc 4892905  T
Q  128 catcgagtttggatctaattgtcatcccta 157  Q
    |||||||| ||| || ||||| ||||||||    
T  4892904 catcgagtctgggtccaattgccatcccta 4892875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 28 - 157
Target Start/End: Original strand, 29185484 - 29185612
Alignment:
Q  28 ccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtc 127  Q
    |||||||| || || ||||||||||||||||| | ||| ||| ||||||||||||||||| |||||||||||||||||  ||||||||||| | | | ||    
T  29185484 ccatacccattaaaatttgcgggtaattacccta-cccgtgcccatatccatgaaagcggggttttaccctacccattgtgggtattttttgcgggtatc 29185582  T
Q  128 catcgagtttggatctaattgtcatcccta 157  Q
    |||||||| ||| || ||||| ||||||||    
T  29185583 catcgagtctgggtccaattgccatcccta 29185612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 35949233 - 35949160
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttacccta 99  Q
    |||| |||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||| |||||||||||    
T  35949233 gcccgtacccttttaagtttgcgggtagttacccggacccatgcccatatccatgaaagcggggttttacccta 35949160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 162
Target Start/End: Original strand, 7815295 - 7815418
Alignment:
Q  38 ttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtccatcgagttt 137  Q
    |||||||||||| |||||||||| |||||  ||||||||||| ||||||||||||||||||||||||| | |||||||||| |   ||||||| | || |    
T  7815295 ttaagtttgcgg-taattacccggacccaaactcatatccataaaagcggagttttaccctacccattgcaggtattttttgcgagtgtccattgggtct 7815393  T
Q  138 ggatctaattgtcatccctaaatgt 162  Q
    || || |||||||||||||| ||||    
T  7815394 gggtccaattgtcatccctatatgt 7815418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 16176743 - 16176602
Alignment:
Q  18 agtatagcgcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggag-ttttaccctacccattacgggtatttt 116  Q
    ||||||| || ||||| | | ||| ||||| |||||||||| | ||||| || ||||||||| ||||||| | |||||| ||||||||||||| ||||||    
T  16176743 agtatagtgctcatacacatctaaatttgcaggtaattacctggacccaagcccatatccataaaagcgggggttttactctacccattacggatatttt 16176644  T
Q  117 ttacagatgtccatcgagtttggatctaattgtcatccctaa 158  Q
    || | | ||||||| | ||||||||| |||||||||||||||    
T  16176643 ttgcgggtgtccattgggtttggatccaattgtcatccctaa 16176602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 157
Target Start/End: Complemental strand, 33362606 - 33362478
Alignment:
Q  28 ccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtc 127  Q
    |||||||| || || ||||||||||||||||| | ||| ||| ||||||||||||||||| |||||| ||||||||||  ||||||||||| | | | ||    
T  33362606 ccatacccattaaaatttgcgggtaattacccta-cccgtgcccatatccatgaaagcggggttttatcctacccattgtgggtattttttgcgggtatc 33362508  T
Q  128 catcgagtttggatctaattgtcatcccta 157  Q
    |||||||| ||| || ||||| ||||||||    
T  33362507 catcgagtctgggtccaattgccatcccta 33362478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 19494785 - 19494859
Alignment:
Q  31 tacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccatt 105  Q
    |||||||||||||||||||||||||||||| |||||||  || | ||||||||||||  ||||||||||||||||    
T  19494785 tacccttttaagtttgcgggtaattacccggacccatgtccagacccatgaaagcgggattttaccctacccatt 19494859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 14106696 - 14106779
Alignment:
Q  27 cccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacggg 110  Q
    ||||||||| || || |||||||||||||||||| ||||| || ||||  ||||||||||| ||||||||||||||||| ||||    
T  14106696 cccatacccattaaaatttgcgggtaattacccggacccaagcccatactcatgaaagcggggttttaccctacccattgcggg 14106779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 118
Target Start/End: Original strand, 20415364 - 20415453
Alignment:
Q  28 ccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||| || || ||||||||||||||||| | ||| ||| |||| |||||||||||| |||||||||||||||||  |||||||||||    
T  20415364 ccatacccattaaaatttgcgggtaattacccta-cccgtgcccatacccatgaaagcggggttttaccctacccattgtgggtatttttt 20415453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 31645902 - 31645828
Alignment:
Q  31 tacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccatt 105  Q
    |||||||||||||||| ||||||||| ||| |||||||  |||| |||||||||||| | |||||||||||||||    
T  31645902 tacccttttaagtttgtgggtaattatccggacccatgtccatacccatgaaagcggggatttaccctacccatt 31645828  T

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Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 236898 - 236989
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| ||||| |||| ||||| ||||||| |||| ||| || | |||||||||||| |||||||||||||||||  |||||||||||    
T  236898 gcccatacccatttaaatttgtgggta-ttacccggacccgtgcccaaacccatgaaagcggggttttaccctacccattgtgggtatttttt 236989  T

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Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 9222626 - 9222717
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| ||||| |||| ||||| ||||||| |||| ||| || |||||| ||||||| |||||||||||||||||  |||||||||||    
T  9222626 gcccatacccatttaattttgtgggta-ttacccgtacccgtgcccagatccataaaagcggggttttaccctacccattgtgggtatttttt 9222717  T

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Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 158
Target Start/End: Complemental strand, 35738683 - 35738551
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatg 125  Q
    |||||||||| | ||| |||||||||||||||||  ||||| || |    |||||||||||| ||||||||||||||||  |||||||||||| ||| ||    
T  35738683 gcccatacccatataaatttgcgggtaattacccatacccaagcccggccccatgaaagcggggttttaccctacccatagcgggtattttttgcaggtg 35738584  T
Q  126 tccatcgagtttggatctaattgtcatccctaa 158  Q
     |||| | || ||| || ||||| |||||||||    
T  35738583 cccatagggtctgggtccaattgccatccctaa 35738551  T

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Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 44327656 - 44327565
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| ||||| |||| ||||| ||||||| |||| ||| || | |||| |||||||||||||||||||||||||  |||||||||||    
T  44327656 gcccatacccatttaattttgtgggta-ttacccgtacccgtgcccagacccataaaagcggagttttaccctacccattgtgggtatttttt 44327565  T

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Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 611106 - 611183
Alignment:
Q  28 ccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccatta 106  Q
    |||||||| ||||| ||| |||||| | ||||| |||| ||| ||||||||||||||||||||||||| ||||||||||    
T  611106 ccatacccatttaaatttacgggtact-acccggacccgtgcccatatccatgaaagcggagttttactctacccatta 611183  T

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Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 135
Target Start/End: Original strand, 34321437 - 34321531
Alignment:
Q  39 taagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtccatcgagt 135  Q
    |||||||||||||||||| ||| ||||| || ||||||||| |||||||  |||||||||| |||||| || |||||||| ||| ||||||| ||||    
T  34321437 taagtttgcgggtaatta-ccggacccaagcccatatccataaaagcgggattttaccctatccattatggatattttttgcag-tgtccatggagt 34321531  T

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Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 158
Target Start/End: Original strand, 39027154 - 39027286
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatg 125  Q
    |||||||||| | ||| |||||| ||||||||||  ||||| |  |  | |||||||||||| ||||||||||||||||  |||||||||||| | | ||    
T  39027154 gcccatacccatataaatttgcgagtaattacccatacccaagtccggacccatgaaagcggggttttaccctacccatagcgggtattttttgcgggtg 39027253  T
Q  126 tccatcgagtttggatctaattgtcatccctaa 158  Q
     |||| |||| ||| || ||||| |||||||||    
T  39027254 cccatagagtctgggtccaattgccatccctaa 39027286  T

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Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 47665776 - 47665868
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| | ||| |||||||||||||||||  ||||| || |  | ||||||||||||  |||||||||||||||  ||||||||||||    
T  47665776 gcccatacccatataattttgcgggtaattacccatacccaagcccggacccatgaaagcggtattttaccctacccatagcgggtatttttt 47665868  T

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Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 157
Target Start/End: Original strand, 32133901 - 32134032
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatg 125  Q
    ||||||||||   ||| |||||||||||||||||  ||||| |  |  | |||||||||||| ||||||||||||||||| ||| |||||||| | | ||    
T  32133901 gcccatacccaaataaatttgcgggtaattacccatacccaagtccggacccatgaaagcggggttttaccctacccattgcggatattttttgcgggtg 32134000  T
Q  126 tccatcgagtttggatctaattgtcatcccta 157  Q
     |||| | || ||| || ||||||||||||||    
T  32134001 cccatagggtctgggtccaattgtcatcccta 32134032  T

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Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 48797043 - 48797129
Alignment:
Q  31 tacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||||||||| | |||||||||   || || ||||||||||||||||||||| ||||| |||| ||||| || |||||||||    
T  48797043 tacccttttaagtttgtgagtaattacctagactcacgctcatatccatgaaagcgga-ttttatcctatccattgcgagtatttttt 48797129  T

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Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 19996403 - 19996326
Alignment:
Q  28 ccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccatta 106  Q
    |||||||| ||||| |||| ||||||| |||||||||| | | || | |||||| ||||||||||||||||||||||||    
T  19996403 ccatacccatttaaatttgtgggtaat-acccgaacccgtccccagacccatgatagcggagttttaccctacccatta 19996326  T

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Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 118
Target Start/End: Original strand, 30490045 - 30490134
Alignment:
Q  28 ccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||| | ||| |||||||||||||||||| ||||| || |||| |||| ||||||| | ||||||||||| |||  |||||||||||    
T  30490045 ccatacccatctaaatttgcgggtaattacccggacccaagcccatacccataaaagcgg-ggtttaccctacctattgtgggtatttttt 30490134  T

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Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 13313118 - 13313209
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| ||||| |||| ||||| ||||||| |||| ||| || | |||  ||||||| |||||||||||||||||  |||||||||||    
T  13313118 gcccatacccatttaattttgtgggta-ttacccgtacccgtgcccagacccagaaaagcggggttttaccctacccattgtgggtatttttt 13313209  T

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Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 27783883 - 27783974
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||| ||||| ||||| |||| ||||| ||||||| |||||||  || |||||| ||||||| |||||||||||||||||  || ||||||||    
T  27783883 gcccgtacccatttaattttgtgggta-ttacccgtacccatgtccaaatccataaaagcggggttttaccctacccattgtggatatttttt 27783974  T

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Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 46772129 - 46772038
Alignment:
Q  27 cccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    ||||||||| | ||| ||||| | |||||| |||||||||  | |||| |||| |||||||| ||||| |||| |||||| |||||||||||    
T  46772129 cccatacccatctaaatttgctgataattatccgaacccaaacccatacccataaaagcggaattttatcctatccattatgggtatttttt 46772038  T

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Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 105
Target Start/End: Original strand, 9473390 - 9473467
Alignment:
Q  27 cccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccatt 105  Q
    |||||||||  |||| |||||| |||||||||||  |||| || |||| ||||||||| ||||||||| ||||||||||    
T  9473390 cccatacccacttaaatttgcgagtaattacccgggccca-gcccatacccatgaaagtggagttttatcctacccatt 9473467  T

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Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 28192117 - 28192036
Alignment:
Q  76 ccatgaaagcggagttttaccctacccattacgggtattttttacagatgtccatcgagtttggatctaattgtcatcccta 157  Q
    |||||||||||| ||||||||||||||||   ||||||||||| | | ||||||| | || ||| || ||||| ||||||||    
T  28192117 ccatgaaagcggggttttaccctacccatagtgggtattttttgcgggtgtccatagggtctgggtccaattgccatcccta 28192036  T

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Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 118
Target Start/End: Complemental strand, 4052007 - 4051914
Alignment:
Q  29 catacccttttaagtttgcgggtaattacccgaacccatgctcatatccatg----aaagcggagttttaccctacccattacgggtatttttt 118  Q
    ||||||| | ||| ||||| |||||||||||| ||||| |  |||| |||||    ||||||| ||||||||||||||||| ||| ||||||||    
T  4052007 catacccatctaaatttgcaggtaattacccggacccaagtccatacccatgcataaaagcggggttttaccctacccattgcggatatttttt 4051914  T

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Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 32835187 - 32835147
Alignment:
Q  76 ccatgaaagcggagttttaccctacccattacgggtatttt 116  Q
    |||||| |||||||||||||||||||||||  |||||||||    
T  32835187 ccatgatagcggagttttaccctacccattgtgggtatttt 32835147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 155
Target Start/End: Original strand, 48514882 - 48514994
Alignment:
Q  43 tttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtccatcgagtttggatc 142  Q
    ||||||||||||||| |  | ||| ||||  |||||||||||||| ||||||||||| ||||  ||| |||||||| | | |||| || |  | ||||||    
T  48514882 tttgcgggtaattactcatatccaagctcggatccatgaaagcggggttttaccctatccatagcggatattttttgcgggtgtctataggatctggatc 48514981  T
Q  143 taattgtcatccc 155  Q
     ||||||||||||    
T  48514982 caattgtcatccc 48514994  T

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Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 26787265 - 26787165
Alignment:
Q  18 agtatagcgcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttt 117  Q
    |||||||||||||||||| | ||| |||||||||||||| ||| ||||| || |||| |||| |||||||||||||| |||||||||| |||||||||||    
T  26787265 agtatagcgcccatacccatctaaatttgcgggtaattatccggacccaagcccatacccataaaagcggagttttatcctacccattgcgggtattttt 26787166  T
Q  118 t 118  Q
    |    
T  26787165 t 26787165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 19455249 - 19455336
Alignment:
Q  31 tacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||||||||||||||||||||||| |||||||| |||| |||||||||||| | ||||||||||||||| | |||| |||||    
T  19455249 tacccttttaagtttgcgggtaattacccggacccatgcccatacccatgaaagcggggatttaccctacccattgcaggtaattttt 19455336  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 152
Target Start/End: Complemental strand, 28956560 - 28956435
Alignment:
Q  27 cccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgt 126  Q
    ||||||||| | ||| |||||||||||||||||| ||||| || |||| |||| || | |  ||||||||||||||||| |||||||||||||| | |||    
T  28956560 cccatacccatctaaatttgcgggtaattacccggacccaagcccatacccataaatgtgaggttttaccctacccattgcgggtattttttacgggtgt 28956461  T
Q  127 ccatcgagtttggatctaattgtcat 152  Q
    |||||| |  |||||| |||||||||    
T  28956460 ccatcgggcctggatccaattgtcat 28956435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 33119374 - 33119436
Alignment:
Q  49 ggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggt 111  Q
    |||||||||||||||||| ||||||| |||| ||||||| |||||||||||||||||||||||    
T  33119374 ggtaattacccgaacccaagctcatacccataaaagcggggttttaccctacccattacgggt 33119436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 31 - 157
Target Start/End: Original strand, 35688769 - 35688895
Alignment:
Q  31 tacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtccat 130  Q
    ||||||||||||||||||| |||||||||| |||||||| |||| |||||||||| |   |||||||||||||||  ||||| ||||| | ||| |||||    
T  35688769 tacccttttaagtttgcggataattacccggacccatgcccatacccatgaaagcaggtatttaccctacccattgtgggtaatttttgcggatatccat 35688868  T
Q  131 cgagtttggatctaattgtcatcccta 157  Q
    || |  ||| |||||| | ||||||||    
T  35688869 cgggcctgggtctaatggccatcccta 35688895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 10084938 - 10084846
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| | ||| |||||||||||||||||  ||||| ||||  | |||||||||||| ||||||||||||||||  ||||||||||||    
T  10084938 gcccatacccatataaatttgcgggtaattacccatacccaagctcggacccatgaaagcggggttttaccctacccatagcgggtatttttt 10084846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 10191858 - 10191766
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| | ||| |||||||||||||||||  ||||| ||||  | |||||||||||| ||||||||||||||||  ||||||||||||    
T  10191858 gcccatacccatataaatttgcgggtaattacccatacccaagctcggacccatgaaagcggggttttaccctacccatagcgggtatttttt 10191766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 157
Target Start/End: Original strand, 46819515 - 46819619
Alignment:
Q  53 attacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtccatcgagtttggatctaattgtcat 152  Q
    |||||||| ||||||| ||||||||| ||||||||||||||||||||||||||  || |||||||| | ||  |||||  | | |||||| |||||||||    
T  46819515 attacccggacccatgttcatatccaagaaagcggagttttaccctacccattgtggatattttttgcggacatccattaaatctggatccaattgtcat 46819614  T
Q  153 cccta 157  Q
    |||||    
T  46819615 cccta 46819619  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 26291455 - 26291373
Alignment:
Q  28 ccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacggg 110  Q
    |||||||| || || |||| |||||||||| || ||||| || ||||  ||||||| ||||||||||||||||||||||||||    
T  26291455 ccatacccattaaaatttgagggtaattactcggacccaagcccatactcatgaaaacggagttttaccctacccattacggg 26291373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 116
Target Start/End: Original strand, 8340398 - 8340482
Alignment:
Q  31 tacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttt 116  Q
    ||||||||||||||| |||||||||||| | ||||||||  ||| ||| |||||||| |||||||||||||| || ||||| ||||    
T  8340398 tacccttttaagtttacgggtaattacctggacccatgcctatacccacgaaagcgg-gttttaccctacccgttgcgggtttttt 8340482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 14418639 - 14418683
Alignment:
Q  74 atccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||||||| |||||||||||||||||| |||||||||||    
T  14418639 atccatgaaagcggggttttaccctacccattatgggtatttttt 14418683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 19619065 - 19619156
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| ||||| |||| ||||| ||||||| |||| ||| || | |||| ||||||| |||||||||||||||||  |||||||||||    
T  19619065 gcccatacccatttaattttgtgggta-ttacccgtacccgtgcccagacccataaaagcggggttttaccctacccattgtgggtatttttt 19619156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 30247749 - 30247667
Alignment:
Q  49 ggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtccatcg 132  Q
    ||||||||||| | ||| ||| |||| |||| |||||||||||||||||||||||||  ||||||||||| | | |||||||||    
T  30247749 ggtaattacccta-cccgtgcccatacccataaaagcggagttttaccctacccattgtgggtattttttgcgggtgtccatcg 30247667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 118
Target Start/End: Original strand, 32995680 - 32995755
Alignment:
Q  43 tttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||||||||||  ||||| || |  | |||||||||||| ||||||||||||||||  ||||||||||||    
T  32995680 tttgcgggtaattacccatacccaagccctgacccatgaaagcggggttttaccctacccatagcgggtatttttt 32995755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 158
Target Start/End: Complemental strand, 42096442 - 42096329
Alignment:
Q  43 tttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtccatcgagtttggatc 142  Q
    ||||||||||||||||| | ||| ||| ||||||||||||||||| |||| |||||| |||||  ||||||||||| | | || |||||| || ||| ||    
T  42096442 tttgcgggtaattacccta-cccgtgcccatatccatgaaagcggggttt-accctatccattgtgggtattttttgcgggtgcccatcgggtctgggtc 42096345  T
Q  143 taattgtcatccctaa 158  Q
     ||||| |||||||||    
T  42096344 aaattgccatccctaa 42096329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 41924375 - 41924480
Alignment:
Q  53 attacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtccatcgagtttggatctaattgtcat 152  Q
    |||||||| |||| | | || |||||| ||||||| |||||||||||||||||  ||||||||||| | | | ||||| || | |||||| ||||| |||    
T  41924375 attacccgtacccgtacccagatccataaaagcggggttttaccctacccattgtgggtattttttgcgggtatccattgaatctggatccaattgccat 41924474  T
Q  153 ccctaa 158  Q
    ||||||    
T  41924475 ccctaa 41924480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 49193838 - 49193919
Alignment:
Q  37 tttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    ||||| |||| ||||||||||||||| ||  ||||| | ||||||||||| | |||||||||| |||||| | |||||||||    
T  49193838 tttaaatttgtgggtaattacccgaatccgagctcaaacccatgaaagcgaaattttaccctatccattaagagtatttttt 49193919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 24987135 - 24987044
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| ||||| |||| ||||| ||||||| |||| ||  || | |||| ||||||| |||||||||||||||||  |||||||||||    
T  24987135 gcccatacccatttaattttgtgggta-ttacccgtacccgtgtccagacccataaaagcggggttttaccctacccattgtgggtatttttt 24987044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 158
Target Start/End: Complemental strand, 38694520 - 38694388
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatg 125  Q
    ||||||||||   ||| |||||||||||||||||  ||||| || |  | ||||||||||||||||||| |||||||||  | | |||||||| | | ||    
T  38694520 gcccatacccaaataaatttgcgggtaattacccatacccaagcccggacccatgaaagcggagttttatcctacccatcgcagatattttttgcgggtg 38694421  T
Q  126 tccatcgagtttggatctaattgtcatccctaa 158  Q
      ||| | || |||||| |||||||||||||||    
T  38694420 ctcatagggtctggatccaattgtcatccctaa 38694388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 158
Target Start/End: Complemental strand, 45078888 - 45078792
Alignment:
Q  62 acccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtccatcgagtttggatctaattgtcatccctaa 158  Q
    |||| ||| |||| |||||||||||| |||||||||||||| ||  ||||||||||| | | |  ||||||||| ||| || ||||| |||||||||    
T  45078888 acccgtgcccatacccatgaaagcggggttttaccctacccgttgtgggtattttttgcgggtacccatcgagtctgggtccaattgccatccctaa 45078792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 49360331 - 49360422
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||| ||||| ||||| |||| ||||| ||||||| |||| ||| || |||||| ||||||| |||||||||||||||||  || ||||||||    
T  49360331 gcccgtacccatttaattttgtgggta-ttacccgtacccgtgcccagatccataaaagcggggttttaccctacccattgtggatatttttt 49360422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 35732697 - 35732738
Alignment:
Q  77 catgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    ||||||||||| ||||||||||| |||| |||||||||||||    
T  35732697 catgaaagcggggttttaccctatccataacgggtatttttt 35732738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 35498029 - 35498065
Alignment:
Q  121 agatgtccatcgagtttggatctaattgtcatcccta 157  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  35498029 agatgtccaacgagtttggatctaattatcatcccta 35498065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 36678733 - 36678693
Alignment:
Q  78 atgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| ||||||||||||||||  ||||||||||||    
T  36678733 atgaaagcggggttttaccctacccatagcgggtatttttt 36678693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 39352839 - 39352930
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| ||||| |||| ||||| ||||||| |||| | | || | |||| ||||| | |||||||||||||||||  |||||||||||    
T  39352839 gcccatacccatttaattttgtgggta-ttacccgtacccgtacccagacccataaaagcagggttttaccctacccattgtgggtatttttt 39352930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 44792366 - 44792275
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| ||||| |||| ||||| ||||||| |||| ||| || | | |  ||||||| |||||||||||||||||  |||||||||||    
T  44792366 gcccatacccatttaattttgtgggta-ttacccgtacccgtgcccagacctagaaaagcggggttttaccctacccattgtgggtatttttt 44792275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 50480797 - 50480706
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||| ||||| ||||| |||| ||||| ||||||| |||| ||  || |||||| ||||||| |||||||||||||||||  || ||||||||    
T  50480797 gcccgtacccatttaattttgtgggta-ttacccgtacccgtgtccagatccataaaagcggggttttaccctacccattgtggatatttttt 50480706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 28 - 157
Target Start/End: Original strand, 27033 - 27161
Alignment:
Q  28 ccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtc 127  Q
    |||||||| || || ||||||||||||||||| | ||| ||| ||||||||||||||||| |||||||||||||||||  ||||||||||| | | | ||    
T  27033 ccatacccattaaaatttgcgggtaattacccta-cccgtgcccatatccatgaaagcggggttttaccctacccattgtgggtattttttgcgggtatc 27131  T
Q  128 catcgagtttggatctaattgtcatcccta 157  Q
    |||||||| ||| || ||||| ||||||||    
T  27132 catcgagtctgggtccaattgccatcccta 27161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 28 - 157
Target Start/End: Complemental strand, 1221423 - 1221295
Alignment:
Q  28 ccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtc 127  Q
    |||||||| || || ||||||||||||||||| | ||| ||| ||||||||||||||||| |||||||||||||||||  ||||||||||| | | | ||    
T  1221423 ccatacccattaaaatttgcgggtaattacccta-cccgtgcccatatccatgaaagcggggttttaccctacccattgtgggtattttttgcgggtatc 1221325  T
Q  128 catcgagtttggatctaattgtcatcccta 157  Q
    |||||||| ||| || ||||| ||||||||    
T  1221324 catcgagtctgggtccaattgccatcccta 1221295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 28 - 157
Target Start/End: Complemental strand, 24446830 - 24446702
Alignment:
Q  28 ccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtc 127  Q
    |||||||| || || ||||||||||||||||| | ||| ||| ||||||||||||||||| |||||||||||||||||  ||||||||||| | | | ||    
T  24446830 ccatacccattaaaatttgcgggtaattacccta-cccgtgcccatatccatgaaagcggggttttaccctacccattgtgggtattttttgcgggtatc 24446732  T
Q  128 catcgagtttggatctaattgtcatcccta 157  Q
    |||||||| ||| || ||||| ||||||||    
T  24446731 catcgagtctgggtccaattgccatcccta 24446702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 10545490 - 10545426
Alignment:
Q  47 cgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggt 111  Q
    ||||||||||| || | ||| ||||||| |||||||||||| |||||||||||||||||||||||    
T  10545490 cgggtaattactcggaaccaagctcatacccatgaaagcggggttttaccctacccattacgggt 10545426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 6336945 - 6336884
Alignment:
Q  34 ccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttacc 96  Q
    ||||||||||| ||||||||||||||| | |||||| ||||||||||||||||| ||||||||    
T  6336945 ccttttaagtt-gcgggtaattacccggatccatgcccatatccatgaaagcggggttttacc 6336884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 53 - 157
Target Start/End: Original strand, 6337602 - 6337706
Alignment:
Q  53 attacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtccatcgagtttggatctaattgtcat 152  Q
    |||||||  |||||||  |||| |||||||||||| |||||||||||||||||  |||| |||||| | | | ||||| | || |||||| |||||||||    
T  6337602 attacccagacccatgtccatacccatgaaagcggggttttaccctacccattgtgggttttttttgcgggtatccattgggtctggatccaattgtcat 6337701  T
Q  153 cccta 157  Q
    |||||    
T  6337702 cccta 6337706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 9061823 - 9061731
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| | ||| |||||||||||||||||  |||||  | |  | |||||||||||| ||||||||||||||||  ||||||||||||    
T  9061823 gcccatacccatataaatttgcgggtaattacccatacccaaacccggacccatgaaagcggggttttaccctacccatagcgggtatttttt 9061731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 33328979 - 33329070
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| ||||| |||  ||||| ||||||| |||| ||| || | |||| ||||||| |||||||||||||||||| |||||||||||    
T  33328979 gcccatacccatttaattttttgggta-ttacccgtacccgtgcccagacccataaaagcggggttttaccctacccattatgggtatttttt 33329070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 33331991 - 33332082
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| ||||| |||  ||||| ||||||| |||| ||| || | |||| ||||||| |||||||||||||||||| |||||||||||    
T  33331991 gcccatacccatttaattttttgggta-ttacccgtacccgtgcccagacccataaaagcggggttttaccctacccattatgggtatttttt 33332082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 31071172 - 31071263
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| ||||| |||| ||||| ||||||| |||| ||| || | |||  ||||||| |||||||||||||||||  |||||||||||    
T  31071172 gcccatacccatttaattttgtgggta-ttacccgtacccgtgcccagacccacaaaagcggggttttaccctacccattgtgggtatttttt 31071263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 117
Target Start/End: Complemental strand, 31783729 - 31783639
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttt 117  Q
    |||||||||| ||||| |||| ||||| ||||||| |||||||| || | |||| ||||||| ||||||||||||  |||  ||||||||||    
T  31783729 gcccatacccatttaattttgtgggta-ttacccgtacccatgcccagacccataaaagcggggttttaccctactaattgtgggtattttt 31783639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 157
Target Start/End: Complemental strand, 13532606 - 13532530
Alignment:
Q  81 aaagcggagttttaccctacccattacgggtattttttacagatgtccatcgagtttggatctaattgtcatcccta 157  Q
    ||||||| ||||||||||||| |||  ||||||||||| | | | ||||| | || ||| |||||||||||||||||    
T  13532606 aaagcggggttttaccctaccaattgtgggtattttttgcgggtatccattgggtctgggtctaattgtcatcccta 13532530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 18975202 - 18975289
Alignment:
Q  31 tacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||||||||||||||||||| ||| |||||||  |||| |||||||||||| | ||||||||||||||| |||||| |||||    
T  18975202 tacccttttaagtttgcgggtaattatccggacccatgtccatacccatgaaagcggggatttaccctacccattgcgggtaattttt 18975289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 157
Target Start/End: Original strand, 4260819 - 4260949
Alignment:
Q  27 cccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgt 126  Q
    ||||||||| | ||| ||||| |||||||||||| ||||| |||||||||||| || | || ||||||||||| ||||||||| |||||||||| | |||    
T  4260819 cccatacccatctaaatttgcaggtaattacccggacccaagctcatatccataaatgaggggttttaccctatccattacggatattttttacgggtgt 4260918  T
Q  127 ccatcgagtttggatctaattgtcatcccta 157  Q
    |||||   | ||| || ||||||||||||||    
T  4260919 ccatcatatctgggtccaattgtcatcccta 4260949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 28 - 157
Target Start/End: Original strand, 4290033 - 4290160
Alignment:
Q  28 ccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtc 127  Q
    |||||||| || || ||||||||||||||||   |||| ||| ||||||||||||||||| |||||||||||||||||  ||||||||||| | | | ||    
T  4290033 ccatacccattaaaatttgcgggtaattacct--acccgtgcccatatccatgaaagcggggttttaccctacccattgtgggtattttttgcgggtatc 4290130  T
Q  128 catcgagtttggatctaattgtcatcccta 157  Q
    |||||||| ||| || ||||| ||||||||    
T  4290131 catcgagtctgggtccaattgccatcccta 4290160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 31 - 157
Target Start/End: Complemental strand, 29545701 - 29545575
Alignment:
Q  31 tacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtccat 130  Q
    |||||||||||||||||||||||||||||  || ||| | |||| ||||||||| || | ||||||||||||||| |||||| ||||| | |||  ||||    
T  29545701 tacccttttaagtttgcgggtaattacccagactcatacccatacccatgaaagtggggatttaccctacccattgcgggtaatttttgcggatacccat 29545602  T
Q  131 cgagtttggatctaattgtcatcccta 157  Q
    || |  ||| |||||||| ||||||||    
T  29545601 cgggcctgggtctaattgccatcccta 29545575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 157
Target Start/End: Complemental strand, 40474924 - 40474796
Alignment:
Q  29 catacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtcc 128  Q
    ||||||| | ||| ||||||||||||||| || ||||| |  ||||||||| || |||  | ||||||||| |||||||||||||||||| | | |||||    
T  40474924 catacccatctaaatttgcgggtaattactcggacccaagtccatatccataaatgcgtggatttaccctatccattacgggtattttttgcgggtgtcc 40474825  T
Q  129 atcgagtttggatctaattgtcatcccta 157  Q
    ||||| | ||| || ||||||||||||||    
T  40474824 atcgaatctgggtccaattgtcatcccta 40474796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 25425137 - 25425228
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| ||||| |||| ||||| ||||||| |||| ||| || |||||| ||||||| |||||||||||||||||  |||||||||||    
T  25425137 gcccatacccatttaattttgtgggta-ttacccgtacccgtgcccagatccataaaagcggggttttaccctacccattgtgggtatttttt 25425228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 31440368 - 31440277
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| ||||| |||| ||||| ||||||| |||||||  || | |||| |||||||||||||||||||||||||  |||||||||||    
T  31440368 gcccatacccatttaattttgtgggta-ttacccgtacccatgtccagacccataaaagcggagttttaccctacccattgtgggtatttttt 31440277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 158
Target Start/End: Complemental strand, 12345205 - 12345094
Alignment:
Q  47 cgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtccatcgagtttggatctaat 146  Q
    |||||||||||||  ||||| || |  | |||||||||||| ||||||||||||||||  |||||||||||| | | || |||| |||||||| || |||    
T  12345205 cgggtaattacccatacccaagcccggacccatgaaagcggggttttaccctacccatagcgggtattttttgcgggtgcccatagagtttgggtccaat 12345106  T
Q  147 tgtcatccctaa 158  Q
    || |||||||||    
T  12345105 tgccatccctaa 12345094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 157
Target Start/End: Original strand, 15162372 - 15162503
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatg 125  Q
    |||||||||| | ||| |||||||||||||||||  ||||| || |  ||||||||||| ||  |||||||||||||||  |||||||||||| | | ||    
T  15162372 gcccatacccatataaatttgcgggtaattacccatacccaagcccggatccatgaaagtgggattttaccctacccatagcgggtattttttgcgggtg 15162471  T
Q  126 tccatcgagtttggatctaattgtcatcccta 157  Q
    ||||| |  | ||| || ||||||||||||||    
T  15162472 tccataggatctgggtccaattgtcatcccta 15162503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 4481437 - 4481528
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    ||||||| || ||||| |||| ||||| ||||||| |||| ||| || |||||| ||||||| |||||||||||||||||  |||||||||||    
T  4481437 gcccatatccatttaattttgtgggta-ttacccgtacccgtgcccagatccataaaagcggggttttaccctacccattgtgggtatttttt 4481528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 29155701 - 29155792
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| ||||| |||| ||||| ||||||| |||| ||| || | |||||||||||| ||||||||||||| || | |||||||||||    
T  29155701 gcccatacccatttaaatttgtgggta-ttacccggacccgtgcccaaacccatgaaagcggggttttaccctacctatcatgggtatttttt 29155792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 33867269 - 33867178
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| ||||| |||| ||||| ||||||| |||| ||| || | |||| ||||||| |||||||||||||||||  |||||||||||    
T  33867269 gcccatacccatttaattttgtgggta-ttacccgtacccgtgcccagacccataaaagcggggttttaccctacccattgtgggtatttttt 33867178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 157
Target Start/End: Original strand, 11789042 - 11789173
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatg 125  Q
    |||||||||| | ||| |||||||||||||| ||  ||||| || |  |||||||||||||  ||||||||||||||||  ||| |||||||| ||| ||    
T  11789042 gcccatacccatataaatttgcgggtaattatccatacccaagcccggatccatgaaagcgaggttttaccctacccatagcggatattttttgcaggtg 11789141  T
Q  126 tccatcgagtttggatctaattgtcatcccta 157  Q
     |||| | || ||| || ||||| ||||||||    
T  11789142 cccatagggtctgggtccaattgccatcccta 11789173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 8027132 - 8027090
Alignment:
Q  76 ccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||||||||||||||||||||||  ||||||||||||    
T  8027132 ccatgaaagcggagttttaccctacccatagcgggtatttttt 8027090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 157
Target Start/End: Complemental strand, 41935140 - 41935054
Alignment:
Q  71 catatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtccatcgagtttggatctaattgtcatcccta 157  Q
    ||||||||||||||||| || |||||||||||||| | |||||||||| | | || |||||  |  ||| |||||||||||||||||    
T  41935140 catatccatgaaagcggggtcttaccctacccattgcaggtattttttgcgggtgcccatcaggcctgggtctaattgtcatcccta 41935054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 159
Target Start/End: Complemental strand, 17961146 - 17961054
Alignment:
Q  67 tgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtccatcgagtttggatctaattgtcatccctaaa 159  Q
    |||||| | |||| ||||||| ||||||||||||| |||| ||||||||||| | ||| ||||| |||| ||| || |||||  |||||||||    
T  17961146 tgctcagacccataaaagcggggttttaccctacctattatgggtattttttgcggatatccattgagtctgggtccaattgcaatccctaaa 17961054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 118
Target Start/End: Complemental strand, 10391341 - 10391267
Alignment:
Q  43 tttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    ||||||||||||||||| | ||| ||| |||| ||||||||||||||||||||  |||| |||  |||||||||||    
T  10391341 tttgcgggtaattacccta-cccgtgcccatacccatgaaagcggagttttacgttacctattgtgggtatttttt 10391267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 157
Target Start/End: Original strand, 20216605 - 20216733
Alignment:
Q  28 ccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtc 127  Q
    |||||||| || || ||||||||||||||||| | ||||||| |||| ||||||||| || |||||||||||||||||  ||||||||||| ||| || |    
T  20216605 ccatacccattaaaatttgcgggtaattacccta-cccatgcccatacccatgaaagtggggttttaccctacccattgtgggtattttttgcaggtgcc 20216703  T
Q  128 catcgagtttggatctaattgtcatcccta 157  Q
    ||||| || ||| || ||||| ||||||||    
T  20216704 catcgggtctgggtccaattgccatcccta 20216733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 157
Target Start/End: Original strand, 20236203 - 20236331
Alignment:
Q  28 ccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtc 127  Q
    |||||||| || || ||||||||||||||||| | ||||||| |||| ||||||||| || |||||||||||||||||  ||||||||||| ||| || |    
T  20236203 ccatacccattaaaatttgcgggtaattacccta-cccatgcccatacccatgaaagtggggttttaccctacccattgtgggtattttttgcaggtgcc 20236301  T
Q  128 catcgagtttggatctaattgtcatcccta 157  Q
    ||||| || ||| || ||||| ||||||||    
T  20236302 catcgggtctgggtccaattgccatcccta 20236331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 38020600 - 38020667
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttacccta 99  Q
    |||| |||||||||||||||||||||||||||||| ||||||||      ||||||||||||||||||||||||    
T  38020600 gcccgtacccttttaagtttgcgggtaattacccggacccatgc------ccatgaaagcggagttttacccta 38020667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 158
Target Start/End: Original strand, 15542601 - 15542731
Alignment:
Q  27 cccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgt 126  Q
    ||||||||| | ||| |||||||||||||||||| ||||| |  |||| |||| ||||||| |||||| |||| | ||| |||||||||||| | | ||     
T  15542601 cccatacccatctaaatttgcgggtaattacccggacccaaggccatacccataaaagcggggtttta-cctatctattgcgggtattttttgcgggtgc 15542699  T
Q  127 ccatcgagtttggatctaattgtcatccctaa 158  Q
    ||||||||  ||| || |||||||||||||||    
T  15542700 ccatcgagcctgggtccaattgtcatccctaa 15542731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 7583731 - 7583773
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatg 68  Q
    |||| |||||||||||||||||||||||||||||| |||||||    
T  7583731 gcccgtacccttttaagtttgcgggtaattacccggacccatg 7583773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 29527875 - 29527833
Alignment:
Q  76 ccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||| |||||||||||||||||||||||| |||||||||    
T  29527875 ccatgaaaacggagttttaccctacccattacgagtatttttt 29527833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 38551998 - 38552075
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctaccca 103  Q
    |||||||||| | ||| |||||||||||||||||  ||||| || |  | |||||||||||| |||||||||||||||    
T  38551998 gcccatacccatataaatttgcgggtaattacccatacccaagcccggacccatgaaagcggggttttaccctaccca 38552075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 38552273 - 38552330
Alignment:
Q  80 gaaagcggagttttaccctacccattacgggtattttttacagatgtccatcgagttt 137  Q
    |||||||||||||||||||||| |  ||||||||||||| | ||||||||| ||||||    
T  38552273 gaaagcggagttttaccctaccaaaaacgggtattttttgcggatgtccatagagttt 38552330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 3616594 - 3616503
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    ||||||| || ||||| |||| ||||| ||||||| |||| ||| || | |||| ||||||| |||||||||||||||||  |||||||||||    
T  3616594 gcccatatccatttaattttgtgggta-ttacccgtacccgtgcccagacccataaaagcggggttttaccctacccattgtgggtatttttt 3616503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 24789897 - 24789988
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    ||||||| || ||||| |||| ||||| ||||||| |||| ||| || |||||| ||||||| |||||||||||||||||  || ||||||||    
T  24789897 gcccatatccatttaattttgtgggta-ttacccgtacccgtgcccagatccataaaagcggggttttaccctacccattgtggatatttttt 24789988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 25419689 - 25419732
Alignment:
Q  76 ccatgaaagcggagttttaccctacccattacgggtatttttta 119  Q
    |||||| |||||||||||||||||||||||  ||||||||||||    
T  25419689 ccatgatagcggagttttaccctacccattgtgggtatttttta 25419732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 25428029 - 25428072
Alignment:
Q  76 ccatgaaagcggagttttaccctacccattacgggtatttttta 119  Q
    |||||| |||||||||||||||||||||||  ||||||||||||    
T  25428029 ccatgatagcggagttttaccctacccattgtgggtatttttta 25428072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 7583769 - 7583811
Alignment:
Q  76 ccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||||| ||||||||||||||||| ||||| ||||||    
T  7583769 ccatgaaagcggggttttaccctacccattgcgggtttttttt 7583811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 37226414 - 37226352
Alignment:
Q  49 ggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggt 111  Q
    |||||||||||  |||||  |||||| |||||||||||| ||||||||||| ||||| |||||    
T  37226414 ggtaattacccagacccaaactcatacccatgaaagcggggttttaccctatccattgcgggt 37226352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 43240040 - 43240082
Alignment:
Q  74 atccatgaaagcggagttttaccctacccattacgggtatttt 116  Q
    |||||||||||||| |||||||||||| |||||| ||||||||    
T  43240040 atccatgaaagcggggttttaccctactcattacaggtatttt 43240082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 157
Target Start/End: Complemental strand, 26560959 - 26560831
Alignment:
Q  28 ccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtc 127  Q
    |||||||| ||||| |||| ||||| ||||||| |||| | | || ||||||||||| || ||||||||||||| |||   |||||||||| | | | ||    
T  26560959 ccatacccatttaaatttgtgggta-ttacccggacccgtccccagatccatgaaaggggggttttaccctacctattgtaggtattttttgcgggtatc 26560861  T
Q  128 catcgagtttggatctaattgtcatcccta 157  Q
    |||| ||| ||| || ||||| ||||||||    
T  26560860 catcaagtctgggtccaattgacatcccta 26560831  T

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Target: scaffold0011 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 158
Target Start/End: Original strand, 250612 - 250732
Alignment:
Q  38 ttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatgtccatcgagttt 137  Q
    |||| ||||||||||||||||   ||||| || |||| |||||||||||| |||||||| |||| ||| |||||||||||| | | ||||||| | |  |    
T  250612 ttaaatttgcgggtaattaccttgacccaagcccatacccatgaaagcggggttttaccataccaattgcgggtattttttgcgggtgtccattgggcct 250711  T
Q  138 ggatctaattgtcatccctaa 158  Q
    || || |||||||||||||||    
T  250712 gggtccaattgtcatccctaa 250732  T

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Target: scaffold0242 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 12763 - 12671
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| ||||| |||| ||||||||||||  |||||  | |  | |||||||||||| ||||||||||||||||  ||||||||||||    
T  12763 gcccatacccatttaaatttgtgggtaattacccatacccaaacccggacccatgaaagcggggttttaccctacccatagcgggtatttttt 12671  T

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Target: scaffold0242; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 21598 - 21506
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| ||||| |||| ||||||||||||  |||||  | |  | |||||||||||| ||||||||||||||||  ||||||||||||    
T  21598 gcccatacccatttaaatttgtgggtaattacccatacccaaacccggacccatgaaagcggggttttaccctacccatagcgggtatttttt 21506  T

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Target: scaffold0024 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 130
Target Start/End: Complemental strand, 109690 - 109586
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtattttttacagatg 125  Q
    |||||||||| | ||| |||||||||||||||||  ||||| || |  | |||||||||||| |||||||| |||||||  ||| |||||||||| ||||    
T  109690 gcccatacccatataaatttgcgggtaattacccatacccaagcccggacccatgaaagcggggttttaccatacccatagcggatattttttacggatg 109591  T
Q  126 tccat 130  Q
     ||||    
T  109590 cccat 109586  T

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Target: scaffold0249 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 20501 - 20584
Alignment:
Q  74 atccatgaaagcggagttttaccctacccattacgggtattttttacagatgtccatcgagtttggatctaattgtcatcccta 157  Q
    |||||||||| |||  ||||||| || |||| || |||||||||| ||| |||||||||||||||| |  ||||||||||||||    
T  20501 atccatgaaatcgggattttaccttatccataacaggtattttttgcaggtgtccatcgagtttgggttcaattgtcatcccta 20584  T

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Target: scaffold0164 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 6836 - 6745
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| ||||| |||| ||||| ||||||| |||| ||  || | |||| ||| |||||||||||||||||||||  || ||||||||    
T  6836 gcccatacccatttaattttgtgggta-ttacccgtacccgtgtccagacccataaaaacggagttttaccctacccattgtggatatttttt 6745  T

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Target: scaffold0164; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 14717 - 14626
Alignment:
Q  26 gcccatacccttttaagtttgcgggtaattacccgaacccatgctcatatccatgaaagcggagttttaccctacccattacgggtatttttt 118  Q
    |||||||||| ||||| |||| ||||| ||||||| |||| ||  || | |||| ||| |||||||||||||||||||||  || ||||||||    
T  14717 gcccatacccatttaattttgtgggta-ttacccgtacccgtgtccagacccataaaaacggagttttaccctacccattgtggatatttttt 14626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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