View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12305_low_24 (Length: 309)
Name: NF12305_low_24
Description: NF12305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12305_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 10968663 - 10968939
Alignment:
| Q |
16 |
gagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcgaattaaggaattaatggactccgataaag |
115 |
Q |
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| T |
10968663 |
gagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcgaattaaggaattaatggactccgataaag |
10968762 |
T |
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| Q |
116 |
ggaaagagattaggaaaattattttcaagatgaaaataagtgctaaagaggcaagagaagaaggtggaagttcacttgttgctttgaataatctggcaca |
215 |
Q |
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| T |
10968763 |
ggaaagagattaggaaaattattttcaagatgaaaataagtgctaaagaggcaagagaagaaggtggaagttcacttgttgctttgaataatctggcaca |
10968862 |
T |
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| Q |
216 |
gttgtggaagcagaagaagcaacctagtatggcgaattgattaacaaaagattgtaatgttatagggatattgtttg |
292 |
Q |
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| T |
10968863 |
gttgtggaagcagaagaagcaacctagtatggcgaattgattaacaaaagattgtaatgttatagggatattgtttg |
10968939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 10982613 - 10982827
Alignment:
| Q |
16 |
gagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcgaattaaggaattaatggactccgataaag |
115 |
Q |
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| T |
10982613 |
gagatgaaggttgctttggaattgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcaaattaaggaattaatggactccgataagg |
10982712 |
T |
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| Q |
116 |
ggaaagagattaggaaaattattttcaagatgaaaataagtgctaaagaggcaagagaagaaggtggaagttcacttgttgctttgaataatctggcaca |
215 |
Q |
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| T |
10982713 |
ggaaagagattagacaaattattttcaagatgaaaataagtgctaaagaggcaagagaagaaggtggaagttcccttgtcgctttgaataagttggctca |
10982812 |
T |
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| Q |
216 |
gttgtggaagcagaa |
230 |
Q |
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| T |
10982813 |
gttgtggaagcagaa |
10982827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 11002846 - 11003030
Alignment:
| Q |
19 |
atgaaggttgctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcgaattaaggaattaatggactccgataaaggga |
118 |
Q |
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| T |
11002846 |
atgaaggtggctttggaactaaatgggtcaaaaaaagggtttgtgagtggaaatgagttgggggagagagttaaggagttgatggaatcagaaaaaggga |
11002945 |
T |
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| Q |
119 |
aagagattaggaaaattattttcaagatgaaaataagtgctaaagaggcaagagaagaaggtggaagttcacttgttgctttgaa |
203 |
Q |
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| T |
11002946 |
aagagattagagagacaattttgaagatgaaaacaagtgctaaggaggcaaaaggaggaggtggatcttctcttgttgatttgaa |
11003030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 203
Target Start/End: Original strand, 11079996 - 11080171
Alignment:
| Q |
28 |
gctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcgaattaaggaattaatggactccgataaagggaaagagatta |
127 |
Q |
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| T |
11079996 |
gctttggaattgaatgagtcaaaagatgggtttgtgagtgaaaatgagttgggggagagagttaaggagttgatggaatcagaaaaggggaaagaggtta |
11080095 |
T |
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| Q |
128 |
ggaaaattattttcaagatgaaaataagtgctaaagaggcaagagaagaaggtggaagttcacttgttgctttgaa |
203 |
Q |
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| T |
11080096 |
gagagacaattttgaagatgaaaataagtgctaaggaagcaagaggaggaggtggatcttctcttgttgatttgaa |
11080171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 11019344 - 11019411
Alignment:
| Q |
136 |
attttcaagatgaaaataagtgctaaagaggcaagagaagaaggtggaagttcacttgttgctttgaa |
203 |
Q |
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||||| || ||||||||||||||||| |||||||||| || ||||||| ||| ||||||| |||||| |
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| T |
11019344 |
attttgaaaatgaaaataagtgctaaggaggcaagaggaggaggtggatcttctcttgttgatttgaa |
11019411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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