View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12305_low_26 (Length: 287)
Name: NF12305_low_26
Description: NF12305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12305_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 49654611 - 49654848
Alignment:
| Q |
1 |
cagcaatcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaacagattatgtcccatgggaacaatgggttgtcctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49654611 |
cagcaatcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaacagattatgtcccatgggaacaatgggttgtcctt |
49654710 |
T |
|
| Q |
101 |
cttactatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctacacctttgattccctttgagttcttcagtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49654711 |
cttactatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctacacctttgattccctttgagttcttcagtga |
49654810 |
T |
|
| Q |
201 |
tgaaaatgcaaatgggtgttctattatgtgatgttgca |
238 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
49654811 |
tgaaaatgcaaatgggtgttctattatgtgatgttgca |
49654848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 6 - 230
Target Start/End: Original strand, 16486263 - 16486487
Alignment:
| Q |
6 |
atcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaacagattatgtcccatgggaacaatgggttgtccttcttac |
105 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
16486263 |
atcgtacatgttgtatgcagaaacatgttatcctcctttggtacaatatgtaacttacaacagattaggtcccattcgaacaatgggttgtccttcttac |
16486362 |
T |
|
| Q |
106 |
tatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctacacctttgattccctttgagttcttcagtgatgaaa |
205 |
Q |
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|
||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
16486363 |
tatgttccaccattaccctgcatgtgtacaggctttgatcgtgacccttatcagtttcaatctacacctttgattccctttgggttcttcggtgatgaaa |
16486462 |
T |
|
| Q |
206 |
atgcaaatgggtgttctattatgtg |
230 |
Q |
| |
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|||||| |||||||||| ||||||| |
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| T |
16486463 |
atgcaagtgggtgttctgttatgtg |
16486487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 6 - 230
Target Start/End: Complemental strand, 21816647 - 21816423
Alignment:
| Q |
6 |
atcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaacagattatgtcccatgggaacaatgggttgtccttcttac |
105 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
21816647 |
atcgtacatgttgtatgcagaaacatgttatcctcctttggtacaatatgtaacttacaacagattaggtcccattcgaacaatgggttgtccttcttac |
21816548 |
T |
|
| Q |
106 |
tatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctacacctttgattccctttgagttcttcagtgatgaaa |
205 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
21816547 |
tatgttccaccattaccctgcatgtgtacaggctttgatcgtgacccttatcagtttcaatctacacctttgattccctttgggttcttcggtgatgaaa |
21816448 |
T |
|
| Q |
206 |
atgcaaatgggtgttctattatgtg |
230 |
Q |
| |
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|||||| |||||||||| ||||||| |
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|
| T |
21816447 |
atgcaagtgggtgttctgttatgtg |
21816423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 14381288 - 14381210
Alignment:
| Q |
153 |
ttatcagtttcaatctacacctttgattccctttgagttcttcagtgatgaaaatgcaaatgggtgttctattatgtga |
231 |
Q |
| |
|
||||||| |||||||| ||| ||| |||| |||||||| || |||||||||||||||| ||| ||||| ||||||||| |
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| T |
14381288 |
ttatcaggttcaatctggaccgttggttccttttgagttatttagtgatgaaaatgcaagtggatgttccattatgtga |
14381210 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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