View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12305_low_28 (Length: 260)
Name: NF12305_low_28
Description: NF12305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12305_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 39627908 - 39628143
Alignment:
| Q |
18 |
ccaataatactataatgctcccaacgacggttaattgccgctcgctaaattaaccaacaacgattaactatcgtgggtggcgaatgccagttaataactg |
117 |
Q |
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| T |
39627908 |
ccaataatactataatgctcccaacgacagttaattgccgctcgctaaattaaccaacaaagattaactatcgtgggtggcgaatgctggttaaaaactg |
39628007 |
T |
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| Q |
118 |
ttggagacattattgtattttcagggtgttagaagagaaatttttaaagtgagatgaacaaaatttgtaagcaatagatgtggccacacacgatttcctt |
217 |
Q |
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| T |
39628008 |
ctggagacattattgtattttcagggtgttagaagagaaatttttaaagtgagatgaacaaaatttgtaagcaatagatgtggccacacacgatttcctt |
39628107 |
T |
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| Q |
218 |
tcttctctccaactcattgtcaaatcgtctctgctt |
253 |
Q |
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| T |
39628108 |
tcttctctccaactcaatgtcaaatcgtctatgctt |
39628143 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 7290281 - 7290338
Alignment:
| Q |
18 |
ccaataatactataatgctcccaacgacggttaattgccgctcgctaaattaaccaac |
75 |
Q |
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| T |
7290281 |
ccaaaaataccataatgaccccaacgacggttaatttatgctcgctaaattaaccaac |
7290338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 37234402 - 37234358
Alignment:
| Q |
47 |
gttaattgccgctcgctaaattaaccaacaacgattaactatcgt |
91 |
Q |
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| T |
37234402 |
gttaattgtcgttcgctaaatgaaccaacaacggttaactatcgt |
37234358 |
T |
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