View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12305_low_29 (Length: 255)

Name: NF12305_low_29
Description: NF12305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12305_low_29
NF12305_low_29
[»] chr1 (3 HSPs)
chr1 (13-238)||(34025996-34026220)
chr1 (4-213)||(35015470-35015669)
chr1 (4-143)||(35014935-35015073)
[»] scaffold0340 (2 HSPs)
scaffold0340 (4-213)||(9889-10088)
scaffold0340 (4-143)||(9354-9492)
[»] chr8 (4 HSPs)
chr8 (4-213)||(26811483-26811682)
chr8 (4-143)||(26812079-26812217)
chr8 (1-38)||(202579-202616)
chr8 (1-38)||(317416-317453)
[»] chr5 (2 HSPs)
chr5 (1-38)||(33087475-33087512)
chr5 (1-38)||(39466887-39466924)
[»] chr3 (3 HSPs)
chr3 (1-38)||(55336-55373)
chr3 (1-38)||(18744622-18744659)
chr3 (1-38)||(18745379-18745416)
[»] chr7 (1 HSPs)
chr7 (4-36)||(33261424-33261456)


Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 34025996 - 34026220
Alignment:
Q  13 tgagggtccaatcaagtccctcaccgtgaaccatgnnnnnnnnttcattagattatgttgtcctaccttatcttacaatgcatctctcatacataataat 112  Q
    |||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34025996 tgagggtccaatcaagtccctcaccgtgaaccatgaaaaaaagc-cattagattatgttgtcctaccttatcttacaatgcatctctcatacataataat 34026094  T
Q  113 tgtttccttctttcttctctcttcctctcacgcaatggcaactgctgtcaaactcccaatagcaacaactatcaaccacccaaccatgtcaacttccaaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34026095 tgtttccttctttcttctctcttcctctcacgcaatggcaactgctgtcaaactcccaatagcaacaactatcaaccacccaaccatgtcaacttccaaa 34026194  T
Q  213 taaatttttaattctaatcaagtaat 238  Q
    ||||||||||||||||||||||||||    
T  34026195 taaatttttaattctaatcaagtaat 34026220  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 213
Target Start/End: Complemental strand, 35015669 - 35015470
Alignment:
Q  4 attctaggatgagggtccaatcaagtccctcaccgtgaaccatgnnnnnnnnttcattagattatgttgtcctaccttatcttacaatgcatctctcata 103  Q
    |||||||| ||||||||||| |||||||||||||||||||||||          |||| |||||||||||| ||||  ||||||| || |||| ||||||    
T  35015669 attctagggtgagggtccaaccaagtccctcaccgtgaaccatgaaagaaaac-cattcgattatgttgtcataccagatcttacgatacatccctcata 35015571  T
Q  104 cataataattgtttccttctttcttctctcttcctctcacgcaatggcaactgctgtcaaactcccaatagcaacaactatcaaccacccaaccatgtca 203  Q
    ||| ||||||||||| |||||||||| ||||||||||||| | ||||||||  ||||||||||| ||||        || |||||| |||||||||||||    
T  35015570 cattataattgtttctttctttcttccctcttcctctcac-ctatggcaaccactgtcaaactctcaat--------ctgtcaacctcccaaccatgtca 35015480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 35014935 - 35015073
Alignment:
Q  4 attctaggatgagggtccaatcaagtccctcaccgtgaaccatgnnnnnnnnttcattagattatgttgtcctaccttatcttacaatgcatctctcata 103  Q
    |||||||  ||||||||||| ||| |||||||||||||||||||          ||||||||||||||||||||||  ||||||||||||| | ||||||    
T  35014935 attctagagtgagggtccaaccaaatccctcaccgtgaaccatgaacaaaaac-cattagattatgttgtcctaccagatcttacaatgcacccctcata 35015033  T
Q  104 cataataattgtttccttctttcttctctcttcctctcac 143  Q
    ||| |||||| |||| ||||||||||||||||||| ||||    
T  35015034 catgataattatttctttctttcttctctcttcctttcac 35015073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 213
Target Start/End: Complemental strand, 10088 - 9889
Alignment:
Q  4 attctaggatgagggtccaatcaagtccctcaccgtgaaccatgnnnnnnnnttcattagattatgttgtcctaccttatcttacaatgcatctctcata 103  Q
    |||||||| ||||||||||| |||||||||||||||||||||||          |||| |||||||||||| ||||  ||||||  || |||| ||||||    
T  10088 attctagggtgagggtccaaccaagtccctcaccgtgaaccatgaaagaaaac-cattcgattatgttgtcataccagatcttatgatacatccctcata 9990  T
Q  104 cataataattgtttccttctttcttctctcttcctctcacgcaatggcaactgctgtcaaactcccaatagcaacaactatcaaccacccaaccatgtca 203  Q
    ||||||||||||||| |||||||||| ||||||||||||| | ||||||||  ||||||||||| ||||        || |||||| |||||||||||||    
T  9989 cataataattgtttctttctttcttccctcttcctctcac-ctatggcaaccactgtcaaactctcaat--------ctgtcaacctcccaaccatgtca 9899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 9354 - 9492
Alignment:
Q  4 attctaggatgagggtccaatcaagtccctcaccgtgaaccatgnnnnnnnnttcattagattatgttgtcctaccttatcttacaatgcatctctcata 103  Q
    |||||||  ||| ||||||| |||||||||||||||||||||||         | |||||||||||||||||||||  ||||||||||||| | ||||||    
T  9354 attctagagtgaaggtccaaccaagtccctcaccgtgaaccatgaacaaaaact-attagattatgttgtcctaccagatcttacaatgcacccctcata 9452  T
Q  104 cataataattgtttccttctttcttctctcttcctctcac 143  Q
    |||||||||| |||| ||||||||||||||||||| ||||    
T  9453 cataataattatttctttctttcttctctcttcctttcac 9492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 213
Target Start/End: Original strand, 26811483 - 26811682
Alignment:
Q  4 attctaggatgagggtccaatcaagtccctcaccgtgaaccatgnnnnnnnnttcattagattatgttgtcctaccttatcttacaatgcatctctcata 103  Q
    |||||||| ||||| ||||| |||||||||||||||||||||||          |||| |||||||||||| ||||  ||||||| || |||| ||||||    
T  26811483 attctagggtgaggatccaaccaagtccctcaccgtgaaccatgaaagaaaac-cattcgattatgttgtcataccagatcttacgatacatccctcata 26811581  T
Q  104 cataataattgtttccttctttcttctctcttcctctcacgcaatggcaactgctgtcaaactcccaatagcaacaactatcaaccacccaaccatgtca 203  Q
    ||||||||||||||  |||||||||| ||||||||||||| | ||||||||  ||||||||||| ||||        || |||||| |||||||||||||    
T  26811582 cataataattgtttatttctttcttccctcttcctctcac-ctatggcaaccactgtcaaactctcaat--------ctgtcaacctcccaaccatgtca 26811672  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 26812217 - 26812079
Alignment:
Q  4 attctaggatgagggtccaatcaagtccctcaccgtgaaccatgnnnnnnnnttcattagattatgttgtcctaccttatcttacaatgcatctctcata 103  Q
    |||||||  ||||||||||| |||||||||||||||||||||||          ||||||||||||||||||||||  ||||||||||| | | ||||||    
T  26812217 attctagagtgagggtccaaccaagtccctcaccgtgaaccatgaacaaaaac-cattagattatgttgtcctaccagatcttacaatggacccctcata 26812119  T
Q  104 cataataattgtttccttctttcttctctcttcctctcac 143  Q
    |||||||||| |||| ||||||||||||||||||| ||||    
T  26812118 cataataattatttctttctttcttctctcttcctttcac 26812079  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 202579 - 202616
Alignment:
Q  1 tgaattctaggatgagggtccaatcaagtccctcaccg 38  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  202579 tgaattctaggatgagggttcaattaagtccctcaccg 202616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 317416 - 317453
Alignment:
Q  1 tgaattctaggatgagggtccaatcaagtccctcaccg 38  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  317416 tgaattctaggatgagggttcaattaagtccctcaccg 317453  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 33087512 - 33087475
Alignment:
Q  1 tgaattctaggatgagggtccaatcaagtccctcaccg 38  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  33087512 tgaattctaggatgagggatcaatcaagtccctcaccg 33087475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 39466887 - 39466924
Alignment:
Q  1 tgaattctaggatgagggtccaatcaagtccctcaccg 38  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  39466887 tgaattctagggtgagggtccaattaagtccctcaccg 39466924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 55373 - 55336
Alignment:
Q  1 tgaattctaggatgagggtccaatcaagtccctcaccg 38  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  55373 tgaattctaggatgagggttcaattaagtccctcaccg 55336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 18744622 - 18744659
Alignment:
Q  1 tgaattctaggatgagggtccaatcaagtccctcaccg 38  Q
    |||||||||||||||||||  |||||||||||||||||    
T  18744622 tgaattctaggatgagggtttaatcaagtccctcaccg 18744659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 18745416 - 18745379
Alignment:
Q  1 tgaattctaggatgagggtccaatcaagtccctcaccg 38  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  18745416 tgaattctagggtgagggttcaatcaagtccctcaccg 18745379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 33261456 - 33261424
Alignment:
Q  4 attctaggatgagggtccaatcaagtccctcac 36  Q
    ||||||||||||||||||||| |||||||||||    
T  33261456 attctaggatgagggtccaattaagtccctcac 33261424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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