View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12305_low_35 (Length: 244)
Name: NF12305_low_35
Description: NF12305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12305_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 53695178 - 53695412
Alignment:
| Q |
1 |
ctttaatcacattcctttaattatgttgacatgttttaagggtttctatggatttaggtttctctgcttttgtttgtttcaatgttttgtattttctttg |
100 |
Q |
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| T |
53695178 |
ctttaatcacattcctttaattatgtagacatgtttta-gggtttctatggatttaggtttctctgcttttgtttgtttcaatgttttgtattttctttg |
53695276 |
T |
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| Q |
101 |
gatcacaaaatctaactatattattgaattcttcttttcagatatttgttggagaaagaaatcatggatggcattacatgtttggcagtgtcctaaagac |
200 |
Q |
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| T |
53695277 |
gatcacaaaatctaactatattattgaattgttcttttcagatatttgttggagaaagaaatcatggatggcattacatgtttgggagtgtcctaaagac |
53695376 |
T |
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| Q |
201 |
ctaaacatttctcagaactaatcatatgcacaggtt |
236 |
Q |
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| T |
53695377 |
ctaaacatttctcagaactaatcatatgcacaggtt |
53695412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 2 - 197
Target Start/End: Original strand, 53685867 - 53686062
Alignment:
| Q |
2 |
tttaatcacattcctttaattatgttgacatgttttaagggtttctatggat----ttaggtttctctgcttttgtttgtttcaatgttttgtattttct |
97 |
Q |
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||||||||||||||||| ||||||| ||||||||||| |||||||||| ||| |||||||| |||||||||| ||||||||||||||||| | | || |
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| T |
53685867 |
tttaatcacattcctttgattatgtagacatgtttta-gggtttctatagatagatttaggtttatctgcttttggttgtttcaatgttttgtctct-ct |
53685964 |
T |
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| Q |
98 |
ttggatcacaaaatctaactatattattgaattcttcttttcagatatttgttggagaaagaaatcatggatggcattacatgtttggcagtgtcctaaa |
197 |
Q |
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| T |
53685965 |
ttggatcacaaaatctaactatatcattgaattgttcttttcagatatttgtttgag--agaaatcatggatgtcatgacagatttgggagtgtcctaaa |
53686062 |
T |
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