View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12305_low_38 (Length: 238)

Name: NF12305_low_38
Description: NF12305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12305_low_38
NF12305_low_38
[»] chr4 (2 HSPs)
chr4 (68-223)||(35324705-35324860)
chr4 (20-49)||(35324858-35324887)
[»] chr5 (2 HSPs)
chr5 (20-207)||(23878597-23878785)
chr5 (36-125)||(23409721-23409810)
[»] chr2 (2 HSPs)
chr2 (36-119)||(16316215-16316298)
chr2 (44-120)||(12808593-12808669)
[»] chr1 (1 HSPs)
chr1 (36-127)||(25268758-25268849)
[»] chr8 (2 HSPs)
chr8 (36-119)||(24997178-24997261)
chr8 (36-117)||(9781981-9782062)
[»] chr7 (2 HSPs)
chr7 (36-120)||(43006040-43006124)
chr7 (36-124)||(3743924-3744012)
[»] chr3 (5 HSPs)
chr3 (41-125)||(30406159-30406243)
chr3 (36-123)||(28230770-28230857)
chr3 (36-113)||(25988609-25988686)
chr3 (36-113)||(25992717-25992794)
chr3 (44-116)||(7516304-7516376)


Alignment Details
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 68 - 223
Target Start/End: Complemental strand, 35324860 - 35324705
Alignment:
Q  68 ttaacaactttagccttaaaccaccataaggagagaagcttaacattctccaaaagcttagctggagcgttttatgttaagcgaaacaacctgacattta 167  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  35324860 ttaacaactttagccttaaaccaccataaggagataagcttaacattctccaaaagcttagctggagcgttttatgttaagcgaaacaacctatcattta 35324761  T
Q  168 tttccttccatattacctataaactagcaaaccaaatcaattatatcagagagcac 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35324760 tttccttccatattacctataaactagcaaaccaaatcaattatatcagagagcac 35324705  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 35324887 - 35324858
Alignment:
Q  20 gcacatagaaataggatttgacaccaatta 49  Q
    ||||||||||||||||||||||||||||||    
T  35324887 gcacatagaaataggatttgacaccaatta 35324858  T

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Target: chr5 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 23878785 - 23878597
Alignment:
Q  20 gcacatagaaatagga-tttgacaccaattatgaaagttataatgaaagttaacaactttagccttaaaccaccataaggagagaagcttaacattctcc 118  Q
    |||||||||||| ||  |||| |||||||| |||||| |||||||||| ||||||| |||||||||||||||| | ||||||||||||||||||||||||    
T  23878785 gcacatagaaatgggggtttggcaccaattgtgaaagctataatgaaaattaacaaatttagccttaaaccactagaaggagagaagcttaacattctcc 23878686  T
Q  119 aaaagcttagctggagcgttttatgttaagcgaaacaacctgacatttatttccttccatattacctataaactagcaaaccaaatcaa 207  Q
    ||||||| || |||||| |||| ||||||||||||||||||| ||||| ||||||||||||||||| || ||||||||||| |||||||    
T  23878685 aaaagctaaggtggagcattttctgttaagcgaaacaacctgtcatttctttccttccatattaccgatgaactagcaaactaaatcaa 23878597  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 23409810 - 23409721
Alignment:
Q  36 tttgacaccaattatgaaagttataatgaaagttaacaactttagccttaaaccaccataaggagagaagcttaacattctccaaaagct 125  Q
    |||| ||||||||||||||| || |||||||   ||||| ||||   ||||||||||| ||||| |||||||||||||||||||||||||    
T  23409810 tttgccaccaattatgaaagctacaatgaaaaacaacaaatttaattttaaaccaccaaaaggaaagaagcttaacattctccaaaagct 23409721  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 16316298 - 16316215
Alignment:
Q  36 tttgacaccaattatgaaagttataatgaaagttaacaactttagccttaaaccaccataaggagagaagcttaacattctcca 119  Q
    |||||||||||||||||||| |||||| |||||| |||  | |||| ||||||||||| ||||||||||| |||||||||||||    
T  16316298 tttgacaccaattatgaaagctataataaaagtttacagatgtagctttaaaccaccagaaggagagaagtttaacattctcca 16316215  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 12808669 - 12808593
Alignment:
Q  44 caattatgaaagttataatgaaagttaacaactttagccttaaaccaccataaggagagaagcttaacattctccaa 120  Q
    |||||||||||| || ||| |||||| |||  |||||| ||||||||||| ||||| ||||| |||| || ||||||    
T  12808669 caattatgaaagctaaaataaaagtttacatatttagctttaaaccaccagaaggaaagaagtttaaaatcctccaa 12808593  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 127
Target Start/End: Complemental strand, 25268849 - 25268758
Alignment:
Q  36 tttgacaccaattatgaaagttataatgaaagttaacaactttagccttaaaccaccataaggagagaagcttaacattctccaaaagctta 127  Q
    |||| |||||||||||||| ||||||  |||  |||||| |||||| ||||||||||| || || |||||||||| ||||||||||||||||    
T  25268849 tttggcaccaattatgaaacttataagaaaaaataacaaatttagctttaaaccaccaaaatgaaagaagcttaatattctccaaaagctta 25268758  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 119
Target Start/End: Original strand, 24997178 - 24997261
Alignment:
Q  36 tttgacaccaattatgaaagttataatgaaagttaacaactttagccttaaaccaccataaggagagaagcttaacattctcca 119  Q
    |||| ||||||| ||||||  |||||| |||||| |||  |||||| ||||||||||| ||||||||||| |||||||||||||    
T  24997178 tttggcaccaatcatgaaaactataataaaagtttacagatttagctttaaaccaccagaaggagagaagtttaacattctcca 24997261  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 9782062 - 9781981
Alignment:
Q  36 tttgacaccaattatgaaagttataatgaaagttaacaactttagccttaaaccaccataaggagagaagcttaacattctc 117  Q
    |||||||||  ||||||||| |||||| |||||| |||  ||||||  |||||||||| ||||| || || |||||||||||    
T  9782062 tttgacaccggttatgaaagctataataaaagtttacacatttagctataaaccaccagaaggaaaggagtttaacattctc 9781981  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 120
Target Start/End: Complemental strand, 43006124 - 43006040
Alignment:
Q  36 tttgacaccaattatgaaagttataatgaaagttaacaactttagccttaaaccaccataaggagagaagcttaacattctccaa 120  Q
    |||| ||||||||||||||| |||||| |||||| |||| |||||| ||||||  | | ||||| || || ||||||||||||||    
T  43006124 tttggcaccaattatgaaagctataataaaagtttacaaatttagctttaaacttcgagaaggaaaggagtttaacattctccaa 43006040  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 3744012 - 3743924
Alignment:
Q  36 tttgacaccaattatgaaagttataatgaaagttaacaactttagccttaaaccaccataaggagagaagcttaacattctccaaaagc 124  Q
    |||| ||||||||||||||| ||||||| ||   ||||| |||||  |||||||| || ||| | |||||||||| |||||||| ||||    
T  3744012 tttggcaccaattatgaaagctataatgtaaaacaacaaatttagttttaaaccatcaaaagaaaagaagcttaatattctccacaagc 3743924  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 30406159 - 30406243
Alignment:
Q  41 caccaattatgaaagttataatgaaagttaacaactttagccttaaaccaccataaggagagaagcttaacattctccaaaagct 125  Q
    ||||||| |||||| |||||||||||   ||||| |||||| ||||||||| | ||||| ||||  |||| ||||||||||||||    
T  30406159 caccaatcatgaaacttataatgaaaaacaacaaatttagctttaaaccactaaaaggaaagaaatttaatattctccaaaagct 30406243  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 28230770 - 28230857
Alignment:
Q  36 tttgacaccaattatgaaagttataatgaaagttaacaactttagccttaaaccaccataaggagagaagcttaacattctccaaaag 123  Q
    |||||||||  ||||||||  ||||||||||   || || |||||| ||||||||||| ||||| |||||||||||||| | ||||||    
T  28230770 tttgacacccgttatgaaaactataatgaaaaacaataaatttagctttaaaccaccaaaaggaaagaagcttaacatttttcaaaag 28230857  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 25988686 - 25988609
Alignment:
Q  36 tttgacaccaattatgaaagttataatgaaagttaacaactttagccttaaaccaccataaggagagaagcttaacat 113  Q
    |||||||||||||||||||| || ||| |||||| |||  |||| | |||||||| || ||||| ||||| |||||||    
T  25988686 tttgacaccaattatgaaagctaaaataaaagtttacagatttaactttaaaccatcagaaggaaagaagtttaacat 25988609  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 25992794 - 25992717
Alignment:
Q  36 tttgacaccaattatgaaagttataatgaaagttaacaactttagccttaaaccaccataaggagagaagcttaacat 113  Q
    |||||||||||||||||||| || ||| |||||| |||  |||| | |||||||| || ||||| ||||| |||||||    
T  25992794 tttgacaccaattatgaaagctaaaataaaagtttacagatttaactttaaaccatcagaaggaaagaagtttaacat 25992717  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 7516304 - 7516376
Alignment:
Q  44 caattatgaaagttataatgaaagttaacaactttagccttaaaccaccataaggagagaagcttaacattct 116  Q
    |||||||||||| |||||| |||||| |||  | |||| ||||||||||  || |||||||| ||||||||||    
T  7516304 caattatgaaagctataataaaagtttacagatgtagctttaaaccacccgaatgagagaagtttaacattct 7516376  T

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