View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12305_low_41 (Length: 208)
Name: NF12305_low_41
Description: NF12305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12305_low_41 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 27395480 - 27395633
Alignment:
| Q |
18 |
ggacgcacctaatctgatgagtgactaactaactattcaataaacagtggattgaagaggagtccttaatgtgtcatcaatgtcaaagaaatgacagtgg |
117 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27395480 |
ggactcacctaatccgatgagtgactaactaactattcaataaacagtggattgaagaggagtccttaatgtgtcatcaatgtcaaagaaatgacagtgg |
27395579 |
T |
|
| Q |
118 |
cagggttgtcagatgcaccaaatgcaaacggaaaagatatcgtgtatgctgtat |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || ||| |||||| |
|
|
| T |
27395580 |
cagggttgtcagatgcaccaaatgcaaacggaaaagatattgtttatcctgtat |
27395633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 155
Target Start/End: Original strand, 51479401 - 51479503
Alignment:
| Q |
53 |
ttcaataaacagtggattgaagaggagtccttaatgtgtcatcaatgtcaaagaaatgacagtggcagggttgtcagatgcaccaaatgcaaacggaaaa |
152 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
51479401 |
ttcaattaacagtggattgcagaggagtccttaatgtgccatcaatgtcagagaaatgacaagggcagggttgtcagatgcacaaaatgcaaacggaaaa |
51479500 |
T |
|
| Q |
153 |
gat |
155 |
Q |
| |
|
||| |
|
|
| T |
51479501 |
gat |
51479503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 53 - 157
Target Start/End: Original strand, 51454891 - 51454995
Alignment:
| Q |
53 |
ttcaataaacagtggattgaagaggagtccttaatgtgtcatcaatgtcaaagaaatgacagtggcagggttgtcagatgcaccaaatgcaaacggaaaa |
152 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||||||||| ||||| || | |||||||||||||||||||| ||||||||||||| || |
|
|
| T |
51454891 |
ttcaatcaacagtggattgaagagggatccttaatgtgtcatcaatgtcagagaaacgataagggcagggttgtcagatgcacaaaatgcaaacggagaa |
51454990 |
T |
|
| Q |
153 |
gatat |
157 |
Q |
| |
|
||||| |
|
|
| T |
51454991 |
gatat |
51454995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 51496380 - 51496483
Alignment:
| Q |
54 |
tcaataaacagtggattgaagaggagtccttaatgtgtcatcaatgtcaaagaaatgacagtggcagggttgtcagatgcaccaaatgcaaacggaaaag |
153 |
Q |
| |
|
||||| |||||||||| |||||||| ||||| ||||| ||||||||||| |||||||||| ||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
51496380 |
tcaatcaacagtggatcgaagaggaatccttgatgtgccatcaatgtcagagaaatgacaagggcagggttgttagatgcacaaaatgcaaacggaaaag |
51496479 |
T |
|
| Q |
154 |
atat |
157 |
Q |
| |
|
|||| |
|
|
| T |
51496480 |
atat |
51496483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 7996926 - 7996979
Alignment:
| Q |
53 |
ttcaataaacagtggattgaagaggagtccttaatgtgtcatcaatgtcaaaga |
106 |
Q |
| |
|
|||||| ||| ||||||||||||||| ||||||| | | ||||||||||||||| |
|
|
| T |
7996926 |
ttcaatcaacggtggattgaagaggaatccttaacgagccatcaatgtcaaaga |
7996979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University