View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12305_low_7 (Length: 489)
Name: NF12305_low_7
Description: NF12305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12305_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 11 - 469
Target Start/End: Original strand, 29027132 - 29027590
Alignment:
| Q |
11 |
cagagacggtaactgcgtttgaccggcggaaagataatcacggactccagcatcgaggttgaaaagctcagtccgaaccgccatggaaacggaggtttcc |
110 |
Q |
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| T |
29027132 |
cagagacggtaactgcgtttgaccggcggaaagataatcacggactccagcatcgaggttgaaaagctcagtccgaaccgccatggaaacggaggtttcc |
29027231 |
T |
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| Q |
111 |
ggtgcacagttagcgaagaagagactgaactcattcggagaagttaccgggtaagaacggttaaacgccgcagttggaggcggtgaaagatcacggaaag |
210 |
Q |
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| T |
29027232 |
ggtgcacagttagcgaagaagagactgaactcattcggagaagttacggggtaagaacggttaaacgccgcagttggaggcggtgaaagatcacggaaag |
29027331 |
T |
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| Q |
211 |
tgaataaacgcgtgatgtaatgtgaatcgagaacgcagaagctagggttttgttggatctcgatgaggacttgaagaagcgattcttcgcttaggaggaa |
310 |
Q |
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| T |
29027332 |
tgaataaacgcgtgatgtaatgtgaatcgagaacgcagaagctagggttttgttggatctcgatgaggacttgaagaagcgattcttcgcttaggaggaa |
29027431 |
T |
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| Q |
311 |
gaatccgagacgagatggatcgggttgtgttgcagcggcggcgacggagacagaggaaacggcgatctggatgtggccggtgtgggtaaatccgaatttc |
410 |
Q |
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| T |
29027432 |
gaatccgagacgagatggatcggtttgtgttgcagcggcggcgacggagacagaggaaacggcgatctggatgtggccggtgtgggtaaatccgaatttc |
29027531 |
T |
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| Q |
411 |
tctaagaggatcatgggtcgggtgtcggaggttattgtgagggatttgatctcagccgt |
469 |
Q |
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| T |
29027532 |
tctaagaggatcatgggtcgggtgtcggaggttattgtgagggatttgatctcagccgt |
29027590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 92 - 322
Target Start/End: Original strand, 40406512 - 40406742
Alignment:
| Q |
92 |
catggaaacggaggtttccggtgcacagttagcgaagaagagactgaactcattcggagaagttaccgggtaagaacggttaaacgccgcagttggaggc |
191 |
Q |
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| T |
40406512 |
catggaaacagaggtttcaggagcgcaattagcgaagaagagactgtattcgttaggggtagtgacgggataagagcggttgaaagaagcggagggagga |
40406611 |
T |
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| Q |
192 |
ggtgaaagatcacggaaagtgaataaacgcgtgatgtaatgtgaatcgagaacgcagaagctagggttttgttggatctcgatgaggacttgaagaagcg |
291 |
Q |
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| T |
40406612 |
ggagagaggtcacggaaagtgaagagacgggaaatgtagtgagaatcgaggacgcagaaggaagggttttgttggatctcgatgaggacttggatgaggg |
40406711 |
T |
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| Q |
292 |
attcttcgcttaggaggaagaatccgagacg |
322 |
Q |
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| T |
40406712 |
tttcttcgttgaggaggaagaaaccgagacg |
40406742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 460
Target Start/End: Original strand, 40406840 - 40406898
Alignment:
| Q |
402 |
ccgaatttctctaagaggatcatgggtcgggtgtcggaggttattgtgagggatttgat |
460 |
Q |
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| T |
40406840 |
ccgaatttttcgaagaggatcatggggcgagtgtcggaagtgatggtgagggatttgat |
40406898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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