View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12305_low_9 (Length: 447)
Name: NF12305_low_9
Description: NF12305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12305_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 72 - 436
Target Start/End: Original strand, 36626260 - 36626624
Alignment:
| Q |
72 |
tgttaattagttttgatagtacaaaaatacccttgctttttaaaaataaatccattgatgcacagctccactccaccatcaaacttacgaacaattcaac |
171 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36626260 |
tgttaattagttttgatagtacaaaaatacccttgctttttaaaaataaatccattgatgcacagctccactccaccatcaaacttacgaacaattcaac |
36626359 |
T |
|
| Q |
172 |
tttcaccccttaaataannnnnnnnnnnnnnnnnnnctaagcaattcaagtattaacccataattatcatttatcacagctttcaacgattcacttgcaa |
271 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36626360 |
tttcaccccttaaattattttttttattttttatttctaagcaattcaagtattaacccataattatcatttatcacagctttcgacgattcacttgcaa |
36626459 |
T |
|
| Q |
272 |
tcacattagatgcactatttgttctttcatttccccaattctttgnnnnnnnataattcatgtgatttctattcttttatttaagattatgaagaagaag |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36626460 |
tcacattagatgcactatttgttctttcatttccccaattctttgtttttttataattcatgtgctttctattcttttatttaagattatgaagaagaag |
36626559 |
T |
|
| Q |
372 |
aaaaattcaactcccagttattcattcccaatctatataggcttccacttcctcaactttagtac |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36626560 |
aaaaattcaactcccagttattcattcccaatctatataggcttacacttcctcaactttagtac |
36626624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 72 - 316
Target Start/End: Original strand, 53323400 - 53323643
Alignment:
| Q |
72 |
tgttaattagttttgatagtacaaaaatacccttgctttttaaaaataaatccattgatgcacagctccactccaccatcaaacttacgaacaattcaac |
171 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
53323400 |
tgttaattaattttgatagtacaaaaatacccttgctttttaaaaataaatccattgatgcacagctccactccaccatcaagcttacgaacaattcaat |
53323499 |
T |
|
| Q |
172 |
tttcaccccttaaataannnnnnnnnnnnnnnnnnnctaagcaattcaagtattaacccataattatcatttatcacagctttcaacgattcacttgcaa |
271 |
Q |
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||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
53323500 |
tttcacccc-taactatatatatatatattttatttctaagcaattcaagtattaacccataattatcatttatcacagctttcggcgattcacttgcaa |
53323598 |
T |
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| Q |
272 |
tcacattagatgcactatttgttctttcatttccccaattctttg |
316 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
53323599 |
tcacattagacgcactatttgttctttcatttccccaattttttg |
53323643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 324 - 436
Target Start/End: Original strand, 53324200 - 53324311
Alignment:
| Q |
324 |
ataattcatgtgatttctattcttttatttaagattatgaagaagaagaaaaattcaactcccagttattcattcccaatctatataggcttccacttcc |
423 |
Q |
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|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53324200 |
ataattcatgtgctttctattcttttattta-gattatgaagaagaagaaaaattcaactcccagttattcattcccaatctatataggcttccacttcc |
53324298 |
T |
|
| Q |
424 |
tcaactttagtac |
436 |
Q |
| |
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||||||||||||| |
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|
| T |
53324299 |
tcaactttagtac |
53324311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 53447990 - 53447911
Alignment:
| Q |
72 |
tgttaattagttttgatagtacaaaaatacccttgctttttaaaaataaatccattgatgca-cagctccactccaccat |
150 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |
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| T |
53447990 |
tgttaattatttttgataatacaaaaatacccttgctttttaaaaataaatccattgatgcatcagcttcactctaccat |
53447911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 53323329 - 53323365
Alignment:
| Q |
1 |
ataagaaatggagtagatttaatgtattgtttggcat |
37 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
53323329 |
ataagaaatggagtagatttaatgtattgtttggcat |
53323365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 36626189 - 36626225
Alignment:
| Q |
1 |
ataagaaatggagtagatttaatgtattgtttggcat |
37 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |
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| T |
36626189 |
ataagaaatggagtagatttaatgtattatttggcat |
36626225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 53447848 - 53447804
Alignment:
| Q |
209 |
taagcaattcaagtattaacccataattatcatttatcacagctt |
253 |
Q |
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|
|||||||||||| ||||||| |||||||||||||||||| ||||| |
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| T |
53447848 |
taagcaattcaattattaactcataattatcatttatcatagctt |
53447804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 214 - 309
Target Start/End: Original strand, 46429845 - 46429939
Alignment:
| Q |
214 |
aattcaagtattaacccataattatcatttatcacagctttcaacgattcacttgcaatcacattagatgcactatttgttctttcatttccccaa |
309 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| | ||| ||| | | |||||| ||||| |||||||||||||||||||||||| |
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| T |
46429845 |
aattcaagtattaacccataat-atcatttatcacagctttcggcacttcccttaccagcacattcgatgccctatttgttctttcatttccccaa |
46429939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 302
Target Start/End: Complemental strand, 25980592 - 25980519
Alignment:
| Q |
229 |
ccataattatcatttatcacagctttcaacgattcacttgcaatcacattagatgcactatttgttctttcatt |
302 |
Q |
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|||||||||||||||||||||||||||| |||| |||| | |||| ||| |||||||||||||||||||||| |
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| T |
25980592 |
ccataattatcatttatcacagctttcagtgatttacttaccatcatattccatgcactatttgttctttcatt |
25980519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 25980748 - 25980708
Alignment:
| Q |
72 |
tgttaattagttttgatagtacaaaaatacccttgcttttt |
112 |
Q |
| |
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||||||||| |||| ||||||| |||||||||||||||||| |
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|
| T |
25980748 |
tgttaattattttttatagtaccaaaatacccttgcttttt |
25980708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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