View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12306_low_1 (Length: 534)
Name: NF12306_low_1
Description: NF12306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12306_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 18 - 521
Target Start/End: Complemental strand, 28439972 - 28439469
Alignment:
| Q |
18 |
aaaagtgtccttgtactaggaaaagaggcacaaacaaataacaaattaagacaagatggttaatattccaaccattttcttcccattctgaccaaaaaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28439972 |
aaaagtgtccttgtactaggaaaagaggcacaaacaaataacaaattaagacaagatggttaatattccaaccattttcttcccattctgaccaaaaaat |
28439873 |
T |
|
| Q |
118 |
aaaatgggggtccttgtactagatattctcactcaccacaaattaaaaaggtccatcaaaagtgtatttatctaagacaagaaaatcaatgatcgatatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28439872 |
aaaatgggggtccttgtactagatattctcactcaccacaaattgaaaaggtccatcaaaagtgtatttatctaagacaagaaaatcaatgatcgatatt |
28439773 |
T |
|
| Q |
218 |
ttaaccgcacatgattttgttatatatgtgcggacaatattaaccattaattaactctgattttactcactttactttgtaaagcgagttgttcacttta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28439772 |
ttaaccgcacatgattttgttatatatgtgcggacaatatcaatcattaattaactctgatattactccctttactttgtaaagcgagttgttcacttta |
28439673 |
T |
|
| Q |
318 |
aatgagtctggtcgatatctaaactatcctgaagtaatcaacacctctttaacatggattttcactgtgaaaatcatttgtttcttccttgtgcacatgg |
417 |
Q |
| |
|
|| ||||||| |||||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28439672 |
aacgagtctgatcgatatctaaattaccttaaagtaatcaacacctctttaacatggattttcactgtgaaaatcatttgtttcttccttgtgcacatgg |
28439573 |
T |
|
| Q |
418 |
attgtgatactttcatctgttggaggtttacatggacatgccatggctatgaattttgggatctcatctcctggcatcaacacaggcaagctctcagcac |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28439572 |
attgtgatactttcatctgttggaggtttacatggacatgccatggctatgaattttgggatctcatctcctggcatcaacacaggcaagctctcagcat |
28439473 |
T |
|
| Q |
518 |
aggt |
521 |
Q |
| |
|
|||| |
|
|
| T |
28439472 |
aggt |
28439469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 445 - 509
Target Start/End: Original strand, 51994938 - 51995002
Alignment:
| Q |
445 |
ttacatggacatgccatggctatgaattttgggatctcatctcctggcatcaacacaggcaagct |
509 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| | | ||||||||||||||||||||||||||| |
|
|
| T |
51994938 |
ttacatgggcatgccaaagctatgaattttggaaccatatctcctggcatcaacacaggcaagct |
51995002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 317
Target Start/End: Complemental strand, 52849453 - 52849411
Alignment:
| Q |
275 |
tgattttactcactttactttgtaaagcgagttgttcacttta |
317 |
Q |
| |
|
|||| |||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
52849453 |
tgatattactcactttactttctaaagtgagttgttcacttta |
52849411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 37951654 - 37951702
Alignment:
| Q |
275 |
tgattttactcactttactttgtaaagcgagttgttcactttaaatgag |
323 |
Q |
| |
|
|||| |||||||||||||| | |||||||||||| |||||||| ||||| |
|
|
| T |
37951654 |
tgatattactcactttactctctaaagcgagttgctcactttagatgag |
37951702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University