View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12306_low_2 (Length: 475)
Name: NF12306_low_2
Description: NF12306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12306_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 40048575 - 40048122
Alignment:
| Q |
1 |
agcaccagcagcgtcaccgaaacatgccccggcaccaaaagcagcgtcaccaacatcgacaaaaccattagtcccgacattaccagacacctcagattcc |
100 |
Q |
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||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40048575 |
agcacaagcagcatcaccgaaacatgccccggcaccaaaagcagcgtcaccaacatcgacaaaaccattagtcccgacattaccagacacctcagattcc |
40048476 |
T |
|
| Q |
101 |
accccggacgacataacaaaaatcctcaaaaaggcgaaaacattcacaatcctaacccgtctcctaagaacaacacaaatcgtggacaacctaaactcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40048475 |
accccggacgacataacaaaaatcctcaaaaaggcgaaaacattcacaatcctaacccgtctcctaagaacaacacaaatcgtggacaacctaaactcac |
40048376 |
T |
|
| Q |
201 |
aactcatatcaccaaaaagcggcggattaacaatcttggcaccggatgactcagctttctcgcatctcaaagcggggttcttcaactcactaaacgaaaa |
300 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
40048375 |
aactcatatcagcaaaaagcggcggattaacaatcttggcaccggatgactcagctttctcgcatctcaaagcagggttcttcaactcgctaaacgaaaa |
40048276 |
T |
|
| Q |
301 |
cnnnnnnntcgaactattacaattccacattcttccacagtttgttgatagcaataactttgattctcttagtaaccctgttgagacagtggctggtaaa |
400 |
Q |
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| T |
40048275 |
caaaaaaatcgaactattacaattccacattcttccacagtttgttgatagcaataactttgattctcttagtaaccctgttgagacagtggctggtaaa |
40048176 |
T |
|
| Q |
401 |
gaccctttaaagcttccattgaacatcgaatcgtttggtaccagtgttagtctt |
454 |
Q |
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| T |
40048175 |
gaccctttaaagcttccattgaacatcgaatcgtttggtaccagtgttagtctt |
40048122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 107 - 235
Target Start/End: Original strand, 22056082 - 22056210
Alignment:
| Q |
107 |
gacgacataacaaaaatcctcaaaaaggcgaaaacattcacaatcctaacccgtctcctaagaacaacacaaatcgtggacaacctaaactcacaactca |
206 |
Q |
| |
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|||||||| |||| |||||| |||||||||||||||||| | |||||| ||||||||||| ||||||| ||||| || || | ||||||| || |||| |
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| T |
22056082 |
gacgacatcacaacaatccttaaaaaggcgaaaacattctccgtcctaatccgtctcctaaaaacaacagaaatcatgagcagcgtaaactcgcagctca |
22056181 |
T |
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| Q |
207 |
tatcaccaaaaagcggcggattaacaatc |
235 |
Q |
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| || |||||| |||||| ||||||||| |
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| T |
22056182 |
tcacagcaaaaaacggcggcttaacaatc |
22056210 |
T |
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