View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12306_low_4 (Length: 340)
Name: NF12306_low_4
Description: NF12306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12306_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 10 - 325
Target Start/End: Original strand, 35256675 - 35256990
Alignment:
| Q |
10 |
acctgtgtcttgtttttaactggaatgaccttttaccagactgggatttatcacactctctaaacttttctcttctaatttgttacttcgtttttgatga |
109 |
Q |
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| T |
35256675 |
acctgtgtcttgtttttaactggaatgaccttttaccagactgggatttatcacactctctaaacttttctcttctaatttgttacttcgtttttgatga |
35256774 |
T |
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| Q |
110 |
ccaccttagtagctgttatgttatataatatgtttgacattctgaatagctaaggtgggtatgttccttcatatttgatatattaatagatattgtatgg |
209 |
Q |
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| T |
35256775 |
ccaccttagtagctgttatgttatataatatgtttgacattctgaatagctaaggtgggtatgttccttcatatttgatatattaatagatattgtatgg |
35256874 |
T |
|
| Q |
210 |
taggctttaattgttgattcttgttatatgcttgattctatattctgatcataaatctaaatttcgaagcacttaggtggatctatgtgtttacgttagg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35256875 |
taggctttaattgttgattcttgttatatgcttgattctatattctgatcataaatagaaatttcgaagcacttaggtggacctatgtgtttacgttagg |
35256974 |
T |
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| Q |
310 |
tattgttgatcatgct |
325 |
Q |
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|||||||||||||||| |
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| T |
35256975 |
tattgttgatcatgct |
35256990 |
T |
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